Lysinibacillus sp. SGAir0095: C1N55_05005
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Entry
C1N55_05005 CDS
T06028
Symbol
addB
Name
(GenBank) helicase-exonuclease AddAB subunit AddB
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
lyg
Lysinibacillus sp. SGAir0095
Brite
KEGG Orthology (KO) [BR:
lyg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lyg03400
]
C1N55_05005 (addB)
Enzymes [BR:
lyg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C1N55_05005 (addB)
DNA repair and recombination proteins [BR:
lyg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
C1N55_05005 (addB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ADDB_N
PDDEXK_1
UvrD-helicase
AAA_19
AAA_16
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
QCR31564
LinkDB
All DBs
Position
1003481..1007002
Genome browser
AA seq
1173 aa
AA seq
DB search
MSLRVISGRAGTGKSTLIHKEIVKELKERPLGSQIYLIVPDQMSYQAEHMLTNQYDIKGI
IRAQVMTFKRLAWYILQETGGIAKEQIDKIGYRMLIRRLLAENKEQFTLFRQSADKRGFT
KEIEQLIKEFSQYNIDSETLNEVIKQLEETSAPNTLIAKTKDLQLILTKLEEVLGDSFVD
SEGFYPILLEQLHNSEKIREAHIYIDGFTAFTVREFEIVKQLMSLAKRVTVVLPFEDPND
KYDDQAVFYRPAVMFDKLLQEAYKNQLEVEPRIHLEDKYRFQNQDLQHVEEQFHQAVAVP
IQSEGFVQIIEGANRRAEIHGIAREICRIVQEEGMRYRDIGIMYRQAEIYDPLVQTIFAQ
YNIPFFTNEKETMLHHPLIEFSRSILEVASSNWQYEPVFRSVKTDLFFPLNSDLKVMREK
ADLFENFVIAQGIYGYRWFEDSRWFYKKYRGLEFYSKRQTDEEIQMQQLIDEMREIIKAP
LERLQEQLKKAETGREIAMALYSCIDELKVYEKLQALKNTELSEHDLHGASEHDQAWNRW
VNVLEQFALLFGNQKLTLEEAAQILDEGFDTLQFSKIPPSVDEVTVSTVEFSRFDNKRTV
FVIGVNDGVYPMRMDYEGLITDIERGWFAEVETELSPTSKHRLLQEAFLIYRAFSSPTDR
LYVTYSSSDEESKALLPSLYINRLHKLFEIGGVKTLPHKRVLNDPIEELESKNTLSYLQH
PRTSLAYLMMQLRQAEYSQQLAPEWLALKTFYEQNANWKYVLQAVMRPLEKKNVAEKLSP
EVTESLYGTELTSSVSRIEKFYRCPFSHFTTYGLRLEERAVYRLENFAMGDLFHEALKWI
TLETERLNLQWNRLTKVQCSQLARQAVEQIVPVFSHQILLSSARYRYIQRKLIRIVERTM
MALSQHAKTSFFKPVAIEAAFGPNEKLPPLEIDLSGGRKMRIQGRIDRIDRAKIGEKSYL
RVIDYKSSSRDLDLNEVYHGISLQLLTYLDVAVENSELWFDGDVDPAGVLYVHVHNPILK
MEQEVDEISLELERMKKYRMKGLLTENAESLIAMDEDLELGGSSKIVPVYLKKDGTASPS
LSRVVQPSDMGQIKQYVRHKHKVAGDGILSGETGIQPYRLKGRTACDYCSFKSVCQFDPT
DHEQLYHQLPADKPTNIVSKIREELKNDGTINS
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgtctttacgagtgatcagtggacgagctggtactggaaagtctacattaatacacaaa
gaaatcgtaaaagaattaaaggaacgacctttaggctctcaaatttacttaatcgttcct
gaccaaatgtcataccaagcagagcacatgttaaccaatcaatatgatataaaaggaatt
attcgagcacaggttatgacgtttaagcgtttagcatggtatatcctgcaagaaacagga
ggaattgcgaaggaacaaatcgacaaaattggttatcgaatgctcattcgacgtttactt
gccgagaataaggagcagtttactttattccgtcaatctgcagataaacgtggatttact
aaagaaattgaacagcttattaaagagtttagccaatataacattgatagcgagacatta
aatgaggtaattaaacaattagaagaaacgtcggctcctaatacacttatagcaaaaaca
aaggatttgcagttgattttgacaaaattagaagaggtcctgggagatagcttcgttgat
agtgaaggtttttatccaatactccttgaacagctgcataattcagaaaaaattagagag
gcacacatttatatagatggttttacagcttttactgttcgagagtttgagatcgtcaaa
cagttaatgtctttagcgaaaagagtgaccgtagtattgccgtttgaggatcctaacgat
aagtatgatgaccaagctgtcttttatcgacctgccgtaatgttcgataaattacttcaa
gaagcatacaaaaatcaacttgaagttgaacctcgtattcatttagaagataaatatcgc
tttcaaaatcaggatttacagcatgttgaagagcaattccatcaagcagtcgccgttcca
attcaatcagaaggatttgttcaaatcattgaaggggcaaacagaagggcggagattcat
gggattgcccgggaaatatgtcgaattgtccaagaagaaggaatgcgttatcgagatatt
ggaattatgtatcgtcaagcagagatctatgatccgttagtacaaactatatttgcacaa
tataatattcctttcttcacaaatgaaaaagagactatgctacatcatccattaatcgaa
ttcagtcgctcgattttagaagtagcttcttctaattggcagtacgagccagtatttaga
agtgttaaaacggatttgttctttccattaaacagtgacttgaaagtaatgcgagagaag
gctgaccttttcgaaaactttgttattgctcaggggatatatggctatcgatggtttgag
gattccagatggttttataaaaaatatcgcggcctagagttttattccaaaagacaaacg
gatgaagaaattcaaatgcagcaactgatagatgaaatgagagaaatcatcaaggctcct
ttagaaagactacaggaacagctaaagaaagctgaaacaggtcgggagatcgcgatggca
ctttatagctgcatagatgaactgaaagtctatgaaaaattgcaggctttaaaaaatact
gaattgagtgagcacgaccttcatggcgccagtgaacatgatcaagcttggaatcggtgg
gtcaatgtattagagcaatttgcccttctatttgggaatcagaagctaacacttgaagaa
gcagcccaaatattagacgaaggatttgatacgctgcaattttccaaaatcccaccttca
gttgatgaagtaactgtctcgacagtagaattttctcgttttgacaataaaaggaccgtg
tttgtaataggtgtgaatgatggcgtatatccgatgcgtatggactatgagggattgatt
acggatattgagcgaggttggtttgcagaagtagagaccgagttatcaccaacttcaaaa
catcgtcttttacaggaagcatttttaatatatcgtgcattttcttctcctaccgataga
ctttatgtcacttattcaagctctgatgaagaaagtaaagcattactgccatcgttatat
ataaatcgattgcataagctgttcgaaatagggggagttaaaactttaccccataagcgt
gttcttaatgacccgattgaggaattggaatcaaaaaatacactttcttacttacagcat
ccaagaacatcccttgcctatttaatgatgcaattacgtcaggcagagtactcacaacaa
ctagcacccgaatggctggcattaaagacgttttatgaacagaatgcaaactggaagtat
gtacttcaagctgtcatgcgacctttggagaagaaaaatgttgccgaaaaactttcgcct
gaagttaccgaaagcctttatggtacagagttaacctcaagtgtgtcacgtatagaaaaa
ttttatcgctgtccgttctcccatttcacaacgtatggattgagattagaagaacgagca
gtttatcgacttgaaaatttcgcgatgggtgatttgttccatgaggctttaaaatggata
acgcttgaaacagagcgtttaaacctccaatggaatcgtctaaccaaagtacaatgcagc
cagcttgctcgtcaggcggtagagcagattgtacctgtattttcccatcaaattttacta
agcagtgcacgctaccgttatattcaacgaaaattaattcgaattgttgaaagaacaatg
atggcactatcacagcatgctaaaacctctttctttaaaccagttgctattgaagcggca
tttggtcctaatgagaagctaccgcctttagaaattgacttatcgggtggaagaaaaatg
cgaattcaaggccgaattgaccgaatagatcgtgccaaaattggcgaaaaatcctatttg
cgtgtcattgactacaaatcatccagtcgcgatttagatttgaatgaggtctaccatggg
atttcactacagttattaacgtatttagatgtagctgttgaaaattctgagctttggttc
gatggcgatgtggaccctgctggagtactttatgttcatgtgcataatccaattttaaaa
atggaacaggaagtagatgaaatctcacttgaattagaacgcatgaaaaagtatcggatg
aagggtcttcttacagaaaatgcggaatcattaattgcaatggacgaagatttggaactg
ggcggtagctcaaaaatagttccagtctatttaaagaaagatggaacagcctccccttca
ttatcacgtgttgttcaaccaagtgatatgggccaaattaaacaatatgtaagacacaaa
cataaggtggctggcgatggcattttaagtggcgagacaggaattcagccttatcgccta
aaggggcgcacagcttgtgattactgtagctttaaatcggtttgtcaatttgatccgact
gatcacgagcagctatatcatcaacttcctgcagataagccgactaatattgtttcgaaa
ataagagaggagttgaaaaacgatgggactatcaattcctga
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