Lysinibacillus sp. SGAir0095: C1N55_07950
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Entry
C1N55_07950 CDS
T06028
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
lyg
Lysinibacillus sp. SGAir0095
Pathway
lyg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lyg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C1N55_07950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lyg03019
]
C1N55_07950
03400 DNA repair and recombination proteins [BR:
lyg03400
]
C1N55_07950
Enzymes [BR:
lyg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C1N55_07950
Messenger RNA biogenesis [BR:
lyg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C1N55_07950
DNA repair and recombination proteins [BR:
lyg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
C1N55_07950
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
DEAD_2
SNF2-rel_dom
LKAAEAR
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QCR34446
UniProt:
A0A4P8SBP3
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All DBs
Position
1610376..1611821
Genome browser
AA seq
481 aa
AA seq
DB search
MKLEEILKKYFGYSDFRPGQKEVIERVLVGQDVIALLPTGMGKSLCYQLPGYIFNKPVLI
ISPLLSLMQDQVDQMKQFKEKRVVALNSFLNPTQKRATIQYLHDYRFIFISPEMLLQEQV
QQKLNSMELSLIVVDEAHCISQWGFDFRPDYLRIGQAIGRGNRPPILALSATATEKVIGD
IESYLNMNKPYKFIHSVDRSNIRLGKQQFQGREDKIDWILDHVTKSAGPGIIYTQSRSKT
ESLSQRLLQSGIASAAYHGGMDPLDRQFIQQQFIDGALEWIVATNAFGMGVHKQNVRQVI
HESIPSNMANYMQEIGRAGRDGKDSLAILLYAEGDEELAKYVGIDDYPVDAHVDSYVNYR
LKNELPTSMIHNGEISETAFRVLDYWMHQLQPAEVKQRLNSMKYEKMRAVEEVKELVDTT
ECVREKLVGYFGQTLERTPDDCCQCCGLDYKNIISKREIENTTLIEWNWKKRIEKLLLGS
S
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
ttgaagcttgaagaaatccttaaaaaatatttcggttattctgattttcgacctggtcaa
aaagaagtgattgaaagggtgcttgttggtcaagacgtgattgcgttactccctactgga
atgggaaaatccctttgctatcagcttccagggtatatttttaataagcctgttttgatt
atctcaccattactttctttaatgcaggaccaagtggatcaaatgaagcaatttaaagaa
aagcgtgttgtggcactcaattcatttttaaatccaacacaaaaaagggcgacaattcaa
tatttacatgactaccgatttattttcatttctcctgagatgctacttcaagagcaagtt
caacaaaaattgaattcgatggagctttctttaatagtagtcgatgaagctcattgtata
tcacagtggggttttgattttagaccagattatttacggattggacaagcaattgggaga
ggaaatcgccctccgatattggctttatctgcaacagcaacggaaaaagtgattggtgat
attgaaagctatttgaatatgaacaagccatataaatttattcattccgtagatcgatcg
aatattcgccttggtaaacaacaatttcaaggtagagaagataaaattgattggatactc
gatcatgtaacgaaatcagcaggaccaggaatcatttacacgcagtcccggtcaaaaaca
gaaagtcttagtcaaagattgcttcaatcaggaatagctagtgctgcttatcatgggggt
atggacccgttggatagacaatttatacagcagcagttcatcgatggagctcttgagtgg
atcgttgcaacgaacgcttttgggatgggtgtacataagcaaaatgttcgtcaggtaatc
cacgaatctatcccgtcaaatatggccaattacatgcaggaaattggtcgtgctggaaga
gatggaaaagattcgcttgccattttgttatatgcagagggtgatgaagaacttgcaaaa
tatgtcggaattgatgattatccagtagatgcccatgttgatagctatgtgaattatcgg
ctaaagaatgaactgccaacctcaatgattcataatggagaaatttcggaaacagctttt
cgtgtgttggattactggatgcaccagcttcagccggctgaggttaaacagcgattaaat
tctatgaaatatgagaaaatgagagctgttgaagaagtaaaggaattagtggatacaact
gaatgcgtaagggaaaaacttgtgggctattttggtcaaacactagaaagaacacccgat
gattgttgtcagtgctgtggtttagactataaaaatatcatttcaaagcgtgaaattgaa
aatacaactcttatagaatggaattggaagaaaagaatcgagaagttactgttggggagt
tcttaa
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