Lysinibacillus sp. SGAir0095: C1N55_15885
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Entry
C1N55_15885 CDS
T06028
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
lyg
Lysinibacillus sp. SGAir0095
Pathway
lyg02020
Two-component system
lyg02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
lyg00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
C1N55_15885 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
C1N55_15885 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lyg03021
]
C1N55_15885 (rpoN)
Transcription machinery [BR:
lyg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
C1N55_15885 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_3
HTH_23
HTH_IclR
DUF2483
HTH_31
Motif
Other DBs
NCBI-ProteinID:
QCR33541
LinkDB
All DBs
Position
complement(3190205..3191533)
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AA seq
442 aa
AA seq
DB search
MYIFLKILQFSNKWGGDMNMQLGMQAVMSQQLTAQMIQHLSILQLTNFELKELVEQKALE
NPLIDLMDHHEEAWSTTKMQKGSIEADYSSIAMKQTVADYLMEQIPLNATAFERTVLTYL
IHSLDERLFLTTDAGEVAQHFEVDLDEAKRFIHILQSFEPIGLGCQNSTEFLLKHIEQCE
NVPYFAKDFVAYEMENIAKMDIVSLRKRYQLTTHEVMATIAFIKELPRIPVISLDEVVAT
VMPDVSVYCIAGQWAIEVEQKAVPSIRLHDVYVKLLRADAPNYLKSCMRDFTTLVQGLDF
RKNTLYDITHYLIEQQPAFFEKGPRALKPMRLKDVAEALHMHESTISRAVKGKYLHTANG
NFAMSDLFVKAINNVTTSSVSDRIAAIIAQENKRSPYSDQQLALLLKEEGIMISRRTVAK
YREQLKIPSSQKRAYLLLEKLE
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atgtatattttcttaaagattttacaattttcaaataaatggggtggggatatgaatatg
cagctggggatgcaggcagtcatgtcgcaacagttaactgcacaaatgattcaacatttg
agtattttacagttaacaaattttgaattgaaagaacttgtcgaacaaaaagctttagag
aatcctttaatagatttgatggatcatcatgaagaggcatggtcaactacaaaaatgcaa
aaggggagcattgaagctgactatagctccattgccatgaaacagacagtagccgattat
cttatggagcaaattcctttaaatgcaacagcttttgaacgaacagtgttaacctactta
attcattcattagatgagcgtttatttttgactacggacgcaggtgaggtcgcacagcat
ttcgaggtggatttagatgaggctaagcgatttattcatatacttcaatcatttgaaccg
attggtctgggttgtcaaaatagcacagagtttttgttgaagcatattgaacaatgcgag
aatgtaccgtatttcgcaaaagactttgtagcatatgaaatggaaaatatcgcgaaaatg
gacattgtgtcattaagaaaacgttatcagttgacaacacatgaagtgatggcaacgatt
gctttcataaaagagttgccgcgtatacctgtaatttctttggatgaagtagtcgcaacg
gtcatgccggatgtctcggtatattgtatagcggggcagtgggcgatagaggtagagcaa
aaagctgtgcctagtattcgtttgcacgatgtatatgtaaagctattaagggcagatgcg
ccaaactatctgaagtcatgtatgcgtgattttacaacccttgtacaagggttagatttc
cgaaaaaatactttatacgatattacacattatttgattgaacagcagcctgcgtttttt
gaaaaaggaccacgtgcattgaagccgatgcgcttaaaagatgttgcagaggcgctacat
atgcatgaatcgacaattagtcgagcggtaaaaggtaagtacttacatacagcaaatggg
aattttgcaatgagtgacttatttgtaaaagccattaataatgtcacaacctcatctgtc
agtgatcggattgcagcaattattgcgcaagaaaataaacgttctccgtatagcgatcaa
caactagctctcttattaaaagaagagggaatcatgatttcgcgcagaacggttgccaaa
taccgcgaacagctcaaaatcccaagctctcagaagcgggcctatctattgctggaaaaa
ctagaataa
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