Lysinibacter sp. HNR: FrondiHNR_00025
Help
Entry
FrondiHNR_00025 CDS
T09375
Symbol
gyrB
Name
(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
lyh
Lysinibacter sp. HNR
Brite
KEGG Orthology (KO) [BR:
lyh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lyh03032
]
FrondiHNR_00025 (gyrB)
03400 DNA repair and recombination proteins [BR:
lyh03400
]
FrondiHNR_00025 (gyrB)
Enzymes [BR:
lyh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
FrondiHNR_00025 (gyrB)
DNA replication proteins [BR:
lyh03032
]
Prokaryotic type
DNA Topoisomerases
FrondiHNR_00025 (gyrB)
DNA repair and recombination proteins [BR:
lyh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
FrondiHNR_00025 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
HATPase_c
Toprim
Motif
Other DBs
NCBI-ProteinID:
WGD37348
LinkDB
All DBs
Position
5038..7047
Genome browser
AA seq
669 aa
AA seq
DB search
MSPEATPDQNENEYGAGDIQVLEGLEAVRKRPGMYIGSTGPRGLHHLVYEIVDNSVDEAL
AGYCDHIDVTILEDGGIRVVDNGRGIPVDIHPVEKKSTVEVVLTILHAGGKFGGGGYAVS
GGLHGVGSSVVNALSTNLEVEVRRQGNVYRQRFTLGVPDAPLEKGEASEESGTTITFWPS
PDIFETVEFDYENLRNRFQQMAFLNKGLSISITDERVQDPDPKEEEDGSETQEPQLRSDT
FLYENGLVDYVTFLNNTKRAEIVNNDIISFELEDTEKKIALEVAMQWTTAYTESVHTYAN
TINTHEGGTHEEGFRAALTTLVNKYAREKNLLRDKDENLSGDDVREGLTAVVSIKLGEPQ
FEGQTKTKLGNTEAKAFVQKVTGDQLGDWFGRNPNVAKEIIRKAISAATARMAARKARET
ARRKSLLESGGMPGKLKDCQSKDPTISEIFIVEGDSAGGSAVLGRNPETQAILPLRGKIL
NVEKARLDRALGNAEVQAMITAFGAGIGEEFDLEKVRYHKIVLMADADVDGQHITTLLLT
LLFRYMRPLIDQGYVYLAQPPLYRIKWSNAEHEYVFSDEERDARLAGGQAAGYRIPKENS
IQRYKGLGEMNYNELWETTMAPESRTLLQVTLDDAMAADQIFTTLMGEDVESRRNFIQKN
AKDVRFLDI
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgagtcccgaagctacaccggatcagaatgaaaacgagtacggagccggagatattcag
gttcttgagggacttgaggcggtaagaaagcgacccggtatgtacattgggtcaacgggt
cctcgcggtcttcaccaccttgtgtatgaaattgtggataactcggttgatgaggcactt
gccggatactgcgatcacattgatgtcaccattttagaagacggtggaattcgtgtggtt
gataatggacgtggtattcccgtcgatatccaccccgttgaaaagaaatcaacggttgag
gttgtgctgactattctccacgcgggtggaaaatttggtggcggcggttatgccgtctcc
ggtggactccacggtgtgggaagctccgtggtaaacgcgctctccaccaaccttgaggtt
gaagttcgtcgtcagggaaacgtataccgtcagcgatttaccctgggagtacccgacgcc
cctctcgaaaaaggagaggcctcggaggagtctggaaccacaatcactttttggccgagt
cccgacatttttgaaaccgtagagtttgattacgaaaacctgcgtaaccgttttcagcag
atggcctttcttaacaaggggctgagtatcagcattacggatgaacgtgtgcaggatccc
gatcccaaagaagaggaagacggcagcgagacacaggagccgcagcttcgcagtgatact
ttcctctatgaaaacggcctggttgactatgtcaccttccttaataacaccaaacgcgcc
gagattgtgaacaacgatattatttcgtttgaactcgaagataccgagaaaaaaatcgcg
cttgaggttgctatgcagtggacaactgcctatacggaaagcgttcacacctacgcaaac
accatcaacacgcacgagggtggaacccacgaggagggttttcgtgccgctcttactacc
ctggtgaataaatatgcgcgcgagaaaaatcttctgcgcgataaagatgaaaacctctcc
ggtgatgacgtgcgcgagggcctcaccgccgtagtgtcaattaaactcggcgaacctcaa
tttgagggccagaccaaaacaaaactcggtaataccgaggcaaaagcctttgtgcaaaag
gttacgggtgatcaactcggcgattggtttggacgaaatcccaatgtagctaaagagatc
atccgcaaggcaatctctgctgcgaccgctcgcatggctgctcgtaaagctcgcgaaacg
gcccgtcgtaagagtctccttgagagtggcggtatgcccggaaagcttaaggattgccag
tccaaagaccccactatttccgaaatattcatcgtggagggtgactcggccggtggatcc
gcggttctcggacgaaacccggaaacccaggccatcctccccctgcgcggaaaaattctc
aacgttgaaaaagcaaggcttgatcgtgccctgggtaacgctgaggtccaggccatgatc
accgcatttggtgcgggaattggcgaggaatttgacctcgaaaaagtgcgataccacaag
attgtcctcatggcggatgccgatgttgacggtcagcacatcacaactttgctcctcacc
ctgctgtttcgctatatgcgtcccctcatcgatcagggttatgtgtatctggcgcagcca
cccctgtaccggattaagtggagtaatgccgagcacgagtatgtctttagtgatgaggag
cgtgacgcgcgacttgccggagggcaggccgcgggataccgcatccctaaagaaaacagc
atccagcggtataagggtctgggtgagatgaactataacgagctctgggaaacaaccatg
gctcccgaaagtcgtaccctgcttcaggtcacgcttgacgatgcgatggcggccgaccag
atcttcaccacccttatgggtgaggatgtggagagccgacgcaactttattcagaaaaac
gcaaaggatgtgcgcttcctcgacatataa
DBGET
integrated database retrieval system
