Lysinibacter sp. HNR: FrondiHNR_03835
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Entry
FrondiHNR_03835 CDS
T09375
Symbol
rfbB
Name
(GenBank) dTDP-glucose 4,6-dehydratase
KO
K01710
dTDP-glucose 4,6-dehydratase [EC:
4.2.1.46
]
Organism
lyh
Lysinibacter sp. HNR
Pathway
lyh00521
Streptomycin biosynthesis
lyh00523
Polyketide sugar unit biosynthesis
lyh00525
Acarbose and validamycin biosynthesis
lyh00541
Biosynthesis of various nucleotide sugars
lyh01100
Metabolic pathways
lyh01110
Biosynthesis of secondary metabolites
lyh01250
Biosynthesis of nucleotide sugars
Module
lyh_M00793
dTDP-L-Rha biosynthesis, Glc-1P => dTDP-L-Rha
Brite
KEGG Orthology (KO) [BR:
lyh00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
FrondiHNR_03835 (rfbB)
09109 Metabolism of terpenoids and polyketides
00523 Polyketide sugar unit biosynthesis
FrondiHNR_03835 (rfbB)
01055 Biosynthesis of vancomycin group antibiotics
FrondiHNR_03835 (rfbB)
09110 Biosynthesis of other secondary metabolites
00521 Streptomycin biosynthesis
FrondiHNR_03835 (rfbB)
00525 Acarbose and validamycin biosynthesis
FrondiHNR_03835 (rfbB)
Enzymes [BR:
lyh01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.46 dTDP-glucose 4,6-dehydratase
FrondiHNR_03835 (rfbB)
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Motif
Pfam:
GDP_Man_Dehyd
Epimerase
Polysacc_synt_2
3Beta_HSD
NAD_binding_4
RmlD_sub_bind
NAD_binding_10
NmrA
adh_short
SelO
Motif
Other DBs
NCBI-ProteinID:
WGD38058
LinkDB
All DBs
Position
complement(889950..890936)
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AA seq
328 aa
AA seq
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MKILVTGGAGFIGSNFVRRTLEDAYPGLEGSNVVVLDALTYSGNLENLTSVASSPRYRFV
KGDIRDGALLDQLLPEIDTVVHFAAESHVDRSVRDSTIFVETNVLGTQQLLDASLRNGVK
RFVHVSTDEVYGSIAEGSWSEDWPLEPNSPYSASKAGSDLLARSYYRTHGLNLSITRCSN
NYGPFHFPEKVIPLFVTNLIDDKHVPLYGEGNNIRDWLHVDDHTRGIAMVVTRGRAGEIY
NIGGGTELTNKQLTQLLLDATEKDWSYVDRVADRLGHDLRYSVDISKIQAELGYEPLVPF
EKGLADVVQWYRDNRAWWEPLKARAALD
NT seq
987 nt
NT seq
+upstream
nt +downstream
nt
atgaagatactcgtaactggtggagctgggtttatcggatccaactttgtgcgacgcact
ctcgaagatgcctatcccggtcttgagggttcgaacgttgtcgtgcttgacgccctcacc
tattccggaaaccttgaaaatctcacctcggtagcttcctctccccgatacaggtttgtc
aagggtgatattcgcgacggtgccctgctcgaccagctccttcccgaaattgacacggtt
gtccacttcgccgcagagagccacgttgaccgctccgttcgggacagcactatttttgtt
gaaacaaatgtgctgggcacccagcagttactcgacgcctcgctccgcaacggggtgaaa
cgttttgtgcacgtctccaccgacgaggtgtacggatcaatcgccgagggatcatggtcg
gaagattggccacttgaacccaattcaccgtactccgcgtcaaaggcgggaagcgatttg
ctcgcccggagctactaccgtacccacgggctcaatctatcgatcactcgctgttccaac
aactacggccccttccactttcccgaaaaagttatccccctctttgtgaccaacctcatt
gatgataagcacgttcccctctacggcgagggcaataatattcgtgattggctacacgtt
gatgaccacacccggggtatcgccatggtggttacccgtggccgtgcgggcgagatttac
aacattggcggaggaacagaactcaccaataagcagctcacgcaactcctgcttgatgca
acggaaaaggattggagctacgtagaccgcgttgcagaccgcctcggccacgacctacgc
tactcggtagacatcagcaagattcaggctgaactcggctacgagccgcttgttcctttt
gaaaagggccttgccgatgtggtgcagtggtaccgcgataaccgggcctggtgggagccg
ctcaaggcccgcgctgccctggactaa
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