Lysinibacter sp. HNR: FrondiHNR_04135
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Entry
FrondiHNR_04135 CDS
T09375
Name
(GenBank) RNA degradosome polyphosphate kinase
KO
K00937
polyphosphate kinase [EC:
2.7.4.1
]
Organism
lyh
Lysinibacter sp. HNR
Pathway
lyh00190
Oxidative phosphorylation
lyh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lyh00001
]
09100 Metabolism
09102 Energy metabolism
00190 Oxidative phosphorylation
FrondiHNR_04135
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FrondiHNR_04135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lyh03019
]
FrondiHNR_04135
Enzymes [BR:
lyh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.4 Phosphotransferases with a phosphate group as acceptor
2.7.4.1 ATP-polyphosphate phosphotransferase
FrondiHNR_04135
Messenger RNA biogenesis [BR:
lyh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
FrondiHNR_04135
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PP_kinase_C_1
PP_kinase
PP_kinase_C
PP_kinase_N
PLDc_2
Motif
Other DBs
NCBI-ProteinID:
WGD38115
LinkDB
All DBs
Position
complement(962298..964445)
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AA seq
715 aa
AA seq
DB search
MNETSAPGPAVSSDNTPIRTELPSNRYTDRELSWLAFNQRVLELAEDPNLPVLERANYLA
IFASNLDEFFMVRVAGLKRRILTGLAVPTNVGRAPHDVLADISKKAHELQERHANAYQEL
VGPALAQAGVHVVTWDSLDQADKDILYQYYSQHIYPILMPLAVDPAHPFPYISGLSLNLS
IRIQNTKTGKEEFARLKVPQMMPRLVRVDKRETLDYVRYIALEDLIANHLDRLFPGMKVL
NHHIFRVTRNEDVAIEEDETENLIQALEKELLRRRFGPPIRLEVSGDMDEETLNLLVREF
DITEQEVYVLPSPLDLRALFEVQKIDRPELHFPKHIPTTNVWLKPSSNNERPDIFKVISR
RDILVHHPYESFTTSVQEFLEQAADDPDVLAIKQTLYRTSGDSPIVAALIKAAESGKQVL
AMVEIKARFDEEANISWARKLEKAGVHVVYGIVGLKTHCKLVHVIREEKGVLRHYSHIGT
GNYNPKTSRIYEDLGLLTASETVGKDLTKLFNVLSGYAIEKKYKRLLVAPLHMRNGLLGR
IEAEAAAARAGHPSGIKIKINSIVDETIIDALYRASNDGVPVDVWVRGTCGIRAGQPGYS
ENIRVRSILGRYLEHSRIFAFHNGGDEDVLIGSADMMHRNLDRRIEALVKLVAPEHITQV
QEMFALAFSDTIASWALETDGTWTRNHVDSKGAPLGDLQDVQMALAHSRRRTGNR
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgaatgagacgtctgccccgggcccggccgtaagttcggacaacacccccatccgcacg
gagcttccctccaaccgctacaccgatcgcgaactcagctggcttgccttcaaccagagg
gtgcttgagcttgcggaggatcccaacctgccggtacttgaacgcgccaactacctggcg
atatttgctagcaatcttgacgagttctttatggtacgggtagccggtctcaagcgtagg
attctcacgggcctcgccgtccccaccaatgtgggacgtgccccgcacgatgtgcttgca
gacatctcaaagaaggcacacgagctacaggagagacacgctaacgcataccaagagctt
gttggtcctgccctcgcacaagcaggtgttcacgtggtcacctgggattccctcgaccag
gcggacaaagacatcctctatcagtactattcccagcacatctatcccatcctgatgccc
ctcgcggtagaccccgcacacccgtttccctatatctcggggctctcgcttaacctctcg
attcggatacaaaacaccaagacgggcaaagaggagtttgctcgactcaaagttccccag
atgatgccccgtctcgtccgggtggataagcgcgaaaccctcgactacgtacgatatatc
gcgctcgaagacctgattgccaaccacctcgatcgcctcttccctgggatgaaggtactg
aatcaccacatttttcgggtcacccgaaacgaagacgttgcgatcgaggaggatgaaacc
gagaacctcatccaggcgcttgaaaaagagctactgcgccgccggtttggcccgcctatc
cggctggaggtcagcggagacatggatgaggaaaccctcaacctgctggtgcgcgagttt
gatatcaccgagcaggaagtttatgttctcccctcgcccctcgacctgcgagcgctgttt
gaggtgcaaaaaattgatcggcccgagcttcacttccccaagcacattcccaccaccaac
gtgtggctgaagccgtcctccaacaacgagcgtcccgacatttttaaggtgatctctcgc
cgggatattctggtacaccacccatacgagtccttcactacgagcgttcaggagtttctc
gagcaggccgcggatgacccggatgttcttgcaatcaaacagacactctaccgcacgtcg
ggtgacagtcccatcgttgccgcgctgattaaagcggcggagtcgggcaagcaggtgctc
gcaatggtcgagatcaaagcgcggttcgatgaagaggccaatatttcctgggcccgcaag
ctagaaaaagcgggtgtgcacgttgtgtatggaatagtgggtctcaaaacgcactgcaag
ctggtgcacgttatccgcgaagaaaagggtgtgctccggcactacagccacatcggaacg
ggaaactacaaccccaaaaccagccgcatctacgaagacctggggttactcaccgcctcc
gaaaccgtgggcaaagacctcactaagctctttaacgtgctctcgggttacgccatcgag
aagaagtacaagcggctcctcgttgcgcccctgcacatgcgcaacggcctgctcggcagg
atcgaggcggaggccgcggcggcgcgggcggggcaccccagcggcatcaagattaagatc
aactcgattgttgacgagaccattattgatgctctctaccgggcgagcaacgacggggtc
cctgtcgatgtgtgggtgcgcggcacctgcggcatccgggcgggtcagccgggatatagc
gagaacatccgggtacgctccatcctgggccgctacctggagcactccagaatttttgcg
ttccacaacggcggcgatgaggatgttctaattggcagcgccgacatgatgcaccgcaac
ctcgaccgccgcattgaggccctggtgaagctggtggctcccgaacacatcacacaggtt
caggagatgtttgccctcgctttcagcgacacgattgcctcgtgggcgcttgaaaccgac
ggcacctggacccgcaatcacgttgatagcaagggcgctcccctcggcgacctccaggac
gtccaaatggctctggctcactctcgtcgcagaacgggaaaccgatga
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