Lysinibacter sp. HNR: FrondiHNR_05255
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Entry
FrondiHNR_05255 CDS
T09375
Symbol
xseA
Name
(GenBank) exodeoxyribonuclease VII large subunit
KO
K03601
exodeoxyribonuclease VII large subunit [EC:
3.1.11.6
]
Organism
lyh
Lysinibacter sp. HNR
Pathway
lyh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lyh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
FrondiHNR_05255 (xseA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lyh03400
]
FrondiHNR_05255 (xseA)
Enzymes [BR:
lyh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.6 exodeoxyribonuclease VII
FrondiHNR_05255 (xseA)
DNA repair and recombination proteins [BR:
lyh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
FrondiHNR_05255 (xseA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_VII_L
tRNA_anti_2
Peptidase_S66
Motif
Other DBs
NCBI-ProteinID:
WGD38321
LinkDB
All DBs
Position
complement(1190777..1192006)
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AA seq
409 aa
AA seq
DB search
MTESVPSAESPWPVAVMSTKIREYIDRLGTIWIEGEVTQWSVSAGNVYGKVKDLEQDATV
SFTIWSSVRSKLPQENFAQGDHVVLLVKPNFWVKGGTLTMQVFSMKQVGLGDLLERLERL
RAKLTDEGLFDLSRKKPLPFLPQRIGLITGKDSDAEKDVLRNAQLRWPGVQFRVVHSAVQ
GDRVPSEVTAAIEKLDSDPQVDVIIIARGGGDFQNLLGFSDERVVRAAAAAATPIVSAIG
HEADRPLLDEVADLRASTPTDAAKRVVPDVAEELARVSQARAQLQTRMTMLISHEVSRIE
QVRSRPVLAESEWIVTTRAEEVTRYVARGSELARRTIERAEGEATELRSRLKALSPRATL
NRGYSIVQAAEGSIIRKPQEAPPGTTLTLTLPGGQIAATSNGDPAFETP
NT seq
1230 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaatcggtaccgtccgcagagagtccgtggccagtagcggtcatgtccacaaag
attcgagagtatatcgatcgcctcggcacaatatggatcgagggtgaggtcacccagtgg
agcgtgtcggcgggaaacgtatacggcaaagtcaaggacctcgaacaggacgcaaccgtc
agctttacaatctggtcctctgttcgttccaagctcccccaagaaaattttgcacagggt
gatcacgttgtgttgctcgttaaacccaatttttgggtcaagggcggcaccctcactatg
caggtttttagtatgaaacaggtgggcctcggcgatctgcttgagcgcctggagcgacta
cgtgccaagcttaccgacgagggcctttttgacctctcgcgcaaaaaaccgctgccgttt
cttccgcagcgcataggcctcattacggggaaagactccgacgccgaaaaagacgttcta
cgcaacgctcaattgcgctggccgggggtacagtttcgggtggttcactcggctgttcag
ggtgatcgagtgccgtcagaagtaaccgcggcaatcgaaaaactagatagcgacccacag
gttgacgtcatcatcatcgcgcgtggtggaggcgatttccaaaacctcctgggcttcagt
gatgagcgggtggtgcgtgcggcggcggcggcggcaacccccattgtgagcgctatcggt
catgaggccgatcgcccactgcttgatgaggtagccgacctgcgggcttccacccccaca
gacgcggcaaagcgtgttgtccccgatgttgcggaggagcttgcgcgcgtctctcaggct
cgcgctcagctacagacccgcatgaccatgctgatctctcacgaggtatcgcgtatcgag
caggttcgctcacgtcccgtactggccgagagcgaatggattgtcaccacacgagcggag
gaggtcacacgctacgtggcccgcggttcagaacttgcccgccgcacgatcgaacgcgcc
gagggtgaagctaccgagctgcgatcccggctcaaagccctctcgccacgggccacgctc
aatcgaggatactcaatcgttcaggccgccgagggtagcatcattcgtaagccgcaagag
gctcccccgggaaccacgctcacgctcaccctccccggcggacagattgccgcaacctca
aacggtgatcccgcgtttgaaacaccctaa
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