Lysinibacter sp. HNR: FrondiHNR_05410
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Entry
FrondiHNR_05410 CDS
T09375
Symbol
gcvP
Name
(GenBank) aminomethyl-transferring glycine dehydrogenase
KO
K00281
glycine cleavage system P protein (glycine dehydrogenase) [EC:
1.4.4.2
]
Organism
lyh
Lysinibacter sp. HNR
Pathway
lyh00260
Glycine, serine and threonine metabolism
lyh00630
Glyoxylate and dicarboxylate metabolism
lyh00670
One carbon pool by folate
lyh00785
Lipoic acid metabolism
lyh01100
Metabolic pathways
lyh01110
Biosynthesis of secondary metabolites
lyh01200
Carbon metabolism
Module
lyh_M00621
Glycine cleavage system
Brite
KEGG Orthology (KO) [BR:
lyh00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
FrondiHNR_05410 (gcvP)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
FrondiHNR_05410 (gcvP)
09108 Metabolism of cofactors and vitamins
00785 Lipoic acid metabolism
FrondiHNR_05410 (gcvP)
00670 One carbon pool by folate
FrondiHNR_05410 (gcvP)
Enzymes [BR:
lyh01000
]
1. Oxidoreductases
1.4 Acting on the CH-NH2 group of donors
1.4.4 With a disulfide as acceptor
1.4.4.2 glycine dehydrogenase (aminomethyl-transferring)
FrondiHNR_05410 (gcvP)
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Motif
Pfam:
GDC-P
GcvP2_C
Aminotran_5
Beta_elim_lyase
Motif
Other DBs
NCBI-ProteinID:
WGD38349
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Position
1220771..1223722
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AA seq
983 aa
AA seq
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MLSQRFIERHIGTNVDDQRTMLDALGYASITDLLDAAVPSAIRVKKPRSSEETPPSLRES
ALPLPATETEAIAELRELAARNTVRRSMIGLGYYNTITPAVIKRNVLENPSWYTAYTPYQ
PEISQGRLEALINFQTMIADLTGLDTANASMLDESTAVVEGMLLARRASKLKVSTFIVDA
ETLPQTKVLLNARAEPLGIMVLERDLARIAREKAWDELPEAFGIFIQYPSAHGQLWNPAS
VIKKVREAGGIAIVAADLLALALVAPPGELGADVAVGTSQRFGVPLGFGGPHAGYLAVRS
GLERQMPGRLVGVSQDADGNPGYRLSLQAREQHIRREKATSNICTAQVLLAIMASMYAVY
HGPNGIRDIARSVHSSAVKLADTLRAGGVEIEHAFFFDTLALRVADSEAVVRAALSRNIN
LYAADATRVLVSVDETTTEADIRSVALACGVAVSEPVDDLREDNLSVTLDDFAIPDDLRR
ASDYLGHEVFNSYHSETSMMRYLKRLADKDYALDRGMIPLGSCTMKLNAATEMESVSWPE
FAGLHPFAPEDDVAGTLELIMQLERWLADVTGYDTVSLQPNAGSQGELAGLLAIRGYHRS
RGEQNRTVCLIPSSAHGTNAASAVLAGMSVVVVACDEKGNIDLGDLQAKIDANADRLAAL
MITYPSTHGVYEGEVAAIIRAAHDAGAQVYVDGANLNALLGYARFGDFGGDVSHLNLHKT
FSIPHGGGGPGIGPVAAKAHLAPFLPGHPMAQRTTHAMYNKAGGWEVVEHGGPPVAAAPY
GSASILPISWAYVRMMGESGLVGATGAAVLAANYIATRLREYYPVLYTGDSGLVAHECIL
DLRPLKEATGITVEDVAKRLIDYGFHAPTMSFPVASTLMVEPTESENLAELDRFIDAMIA
IRREAEAVGRGDFPPDDNPLRGAPHTAHALISGAWEHSYTREQAAYPVAGIVRNKYWPPV
RRIDQAYGDRNLVCSCPSPEAFI
NT seq
2952 nt
NT seq
+upstream
nt +downstream
nt
atgctgagtcaacgatttattgaacgtcatatcggtacaaatgtggacgatcagcgcacc
atgcttgacgcgctgggctatgcctctattactgatctgcttgatgcggctgtgccgtca
gccattcgggtgaaaaagcctcgctcaagcgaggagacacccccttccctgcgggagagt
gccctgccgctgcccgcaactgagacggaagcaatcgcggagctgcgggagcttgccgcg
cgcaacacggtgcgtcgttcgatgatcggattgggttactacaacacgattaccccggcg
gttattaagcgcaacgtgttagagaaccccagctggtacaccgcctacactccttaccag
cccgaaatctcacagggtcgccttgaggccctcatcaactttcaaacgatgattgccgat
ctcacaggcctagacaccgccaacgcttcgatgctggacgagtccaccgccgtggtggag
ggcatgctcctggcacgtcgagcctcgaagcttaaagtgtcaacctttatcgtggatgct
gaaacgttaccacagacaaaagtgctgttaaacgcgcgggctgaaccgctgggcatcatg
gttctggaacgtgacctggctcgtatcgcgcgggagaaagcgtgggatgagctaccggaa
gcgtttggtatttttattcagtacccctcggcccatggacaactgtggaaccccgcatcc
gtcattaagaaggtgcgtgaggccggcggaatcgctattgttgcggccgatcttcttgct
ctcgctcttgttgcccctccgggtgagttgggggcagatgtcgccgttggtaccagtcag
cgttttggtgttccgttgggctttggggggccgcatgccggctacctagccgtgcgttcc
ggtctggaacgccagatgcccgggcgcctggtgggggtgagtcaagacgccgatggaaat
cccgggtatcgtctcagtctccaggcccgtgagcagcacattcgccgagagaaagccacc
tcgaacatttgtaccgcccaggttcttttggccattatggcctccatgtacgcggtgtat
cacggtcccaacggcatccgcgatatcgctcgttcggtgcacagtagcgcggttaaactg
gctgatacgctccgcgccggtggtgtagagattgagcacgctttcttctttgacaccctt
gccctgcgggttgcagactccgaagccgtggtgagggcagcgctgtctcgtaatatcaat
ctgtacgcggctgatgcgacgcgcgtgctggtttcggtagacgagaccacgaccgaagca
gatatcagatccgtagcgcttgcctgtggcgtagcggtctcggagcctgtggacgatctt
cgtgaggacaacctctctgtcacgcttgacgatttcgcgataccagacgaccttcgacgc
gcgtcagattatctgggccacgaggttttcaacagttatcactccgagacctccatgatg
cgctatctcaagcgcctagcggataaagactacgctcttgaccgcggcatgattcccctg
ggttcctgcactatgaagcttaacgcggccacagagatggagtccgtgagctggccagag
tttgccggtttgcaccccttcgcgcccgaagacgatgtggcgggaacacttgaacttatt
atgcaattggagcggtggctcgccgatgtcacagggtacgacaccgtctcgcttcaaccc
aacgcgggaagccagggtgagttagcaggacttttggctatccgcgggtatcatcgttcg
cggggtgagcagaaccgtacggtctgtctgattccctcgagcgcacacggtaccaatgca
gcgtcggctgtgctcgcgggaatgtcagttgtggttgttgcgtgtgatgagaaggggaac
attgatcttggcgatctgcaggccaaaatcgatgccaatgccgaccgccttgctgcactc
atgattacctacccctccacacacggtgtttacgagggtgaggtagcggctatcatccgg
gctgctcacgatgcgggtgctcaggtttacgtcgatggtgcaaacttgaatgccctgctg
gggtacgcacgctttggagattttggtggggacgtgtcgcatcttaatctgcataaaacc
ttttctatcccacacggcggtggaggaccgggaatcggtcctgtggctgccaaggctcat
ctggcgccattcttgccggggcacccaatggcgcagcgcaccacgcacgccatgtataac
aaggctggtggctgggaagttgtcgagcacggcggacctccggtggcggcggcgccctac
ggcagtgcaagtatcctacctatatcgtgggcctacgtgcgtatgatgggtgagtctggg
ctggtgggcgcgacgggagctgctgtgctcgccgcaaactacatcgcaactaggttgcgt
gagtattatcccgtgctttacacgggagatagtggcctggtggcgcacgagtgtattttg
gacctgcgtcccctcaaggaggccaccggcatcaccgttgaggatgtcgcaaagcgtctg
atcgactacggctttcacgcccctactatgtcgtttcccgttgcgagtactctgatggtg
gagccaacagagtcggagaatctcgcagagttagaccgctttatcgatgccatgatcgct
attaggcgagaggccgaggccgtgggccgaggtgattttccacccgacgataaccccctg
cgtggtgctcctcacaccgcacatgctctgatctcaggggcatgggagcactcttacacg
cgtgagcaggccgcctatccggtcgccgggattgtaaggaataagtattggccccccgtg
cgacgtattgatcaagcctacggagatcgtaatctggtgtgctcctgcccgtcacctgag
gcatttatctaa
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