Lysinibacter sp. HNR: FrondiHNR_05955
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Entry
FrondiHNR_05955 CDS
T09375
Symbol
orn
Name
(GenBank) oligoribonuclease
KO
K13288
oligoribonuclease [EC:3.1.-.-]
Organism
lyh
Lysinibacter sp. HNR
Pathway
lyh03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
lyh00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
FrondiHNR_05955 (orn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lyh03019
]
FrondiHNR_05955 (orn)
03009 Ribosome biogenesis [BR:
lyh03009
]
FrondiHNR_05955 (orn)
Messenger RNA biogenesis [BR:
lyh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FrondiHNR_05955 (orn)
Ribosome biogenesis [BR:
lyh03009
]
Eukaryotic type
Pre-60S particles
RNases
FrondiHNR_05955 (orn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Motif
Other DBs
NCBI-ProteinID:
WGD38450
LinkDB
All DBs
Position
complement(1344237..1344821)
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AA seq
194 aa
AA seq
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MSTPAEQLVWIDCEMTGLNPRIDELVEIAIVITDFNLTPLDAGLSVVIKPTTAALDSMGD
FVTTMHTNSGLITEIPRGVTVIEAEKRAIDYINEYVPEGKRPLLAGNTIGTDRMFIAAHM
PSLDQRLHYRNIDVSSIKELSRRWFPSAYHSAPDKNGGHRALADILESIQELAYYRSTVF
IQDVEPNNTAPKTL
NT seq
585 nt
NT seq
+upstream
nt +downstream
nt
atgagcacacctgccgaacaactagtatggattgactgcgagatgacaggcctcaatccc
cgcatagacgagcttgttgaaattgccatcgtcatcaccgattttaacctcaccccgctc
gatgcgggcctcagtgttgtcatcaagccaactaccgccgccctcgacagtatgggggat
tttgtcaccacaatgcacactaactccggcctcatcacggagattccccgcggcgtaacg
gttatagaggcagaaaaacgagccatcgactacatcaatgagtatgttcccgagggtaag
cgtccactgctcgcgggaaacaccatcggcacagaccgcatgtttatcgcggcccacatg
ccctcccttgatcagcgtttacactataggaacatcgacgtttcctcgatcaaagaactt
tcgcgccgctggtttccctcggcataccacagcgcccccgataaaaacggcggacaccgt
gcacttgccgatattttagaatcaatccaggagcttgcctactatcgctctaccgtattt
attcaggacgttgaaccaaacaatacggcgccaaaaactctctaa
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