Lysinibacter sp. HNR: FrondiHNR_07800
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Entry
FrondiHNR_07800 CDS
T09375
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
lyh
Lysinibacter sp. HNR
Pathway
lyh03420
Nucleotide excision repair
lyh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lyh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FrondiHNR_07800
03430 Mismatch repair
FrondiHNR_07800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lyh03400
]
FrondiHNR_07800
Enzymes [BR:
lyh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FrondiHNR_07800
DNA repair and recombination proteins [BR:
lyh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FrondiHNR_07800
MMR (mismatch excision repair)
Other MMR factors
FrondiHNR_07800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
Viral_helicase1
AAA_30
Motif
Other DBs
NCBI-ProteinID:
WGD36383
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Position
complement(1727093..1730404)
Genome browser
AA seq
1103 aa
AA seq
DB search
MTVNAHEIADALGLPRPTPQQVRVIESDPRTPTLVIAGAGSGKTETMANRVLWLVANKLV
QPSEVLGLTFTRKAAGELDERITKRLDQLVAHGLASARGDDLLDQPTVSTYNSFASSIVS
ERSLLVGREPDSTVIDESTAWRLARQTVVASEDTRLVSLDRSVGRITDAVLHLERAMREN
LCTAEQILDIATEFERLLDLPISETGSKKTPYASVVTAVGEVSALHPLVALAERYTEEKR
RRGFLEFSDQVALALEVCRRSKATVSDYRARHRVILLDEYQDTSVVQTWLLAELFANHGV
MAVGDPHQSIYGWRGASSDNLNTFSTQFARGNSRILSLSTSWRNSRAVLDVANHLVTPLT
QKSRVPVETLSARPEAPAGLVQTVYPETIEDEATAVARWMADQIARATPQSPVSGAVICR
NRSIMSQFSDALTREGVPNRILGLGGLLSSPEVVDIVSMLRTVWFTDANSALIRTLSGPR
WRIGVSDLAALHSAARWLVAHDWKLTPLSAEQQRIRRESLAPEDSASLIDALDAVAAATD
DKHEMLRGFSREGLRRIREAGEVIATIRSRTSLSIADLVRIVEVELRLDTEVMAVTGHVG
ATGVDVKEAQKHARRNLDALYDVIANFVATNEDSTLPSFLSWLDHAERQDSFAARPEAPD
PNAVQLITAHGAKGLEWDVVAVPRLCEGDFPSPSRSGAGWLRIGQLPDELKGDAASLPSL
PWREVHTQKEFNDLLTEYKNQARERQEGEERRLIYVATTRARERLLLSGSFWAEQTRPRS
PSRFLTELVQAGLVAEVPESSEYRENPLNSTQASFEWPGDPLGSRRPVVEDASAMVTQLR
DSLSAEQLMRLITPDIRNDLILLLEERQRENTRGEGALLPQRITASGFKDFISNPDEIVR
RMRRPVPQKPFAQTRLGTQFHEWVEQRYATPRGSAIPLLDDVFSPFIDPEHDIDGEASGA
ADGSHEGGSITLAQLQATFEASEWGDRQPVEVEREIHIPFAGRTLVCKIDAVYSQNIEGV
EHFEIVDWKTGRAPRTEAEIAERQLQLALYRVAYATWKNIELDRVSVALYYVAENTIIRP
TSLPSLEQMESIWFAAVSSQNQM
NT seq
3312 nt
NT seq
+upstream
nt +downstream
nt
atgacggtgaacgcccacgagattgcggatgctctgggcctgcccaggcccacccctcag
caggtgcgcgtgattgagtccgatcctcgtacgcccacgcttgtgattgccggtgccgga
agcggtaaaaccgaaaccatggccaatcgggttttgtggcttgtagcgaataaactggtg
cagccgtcagaggttctgggcctcacgttcactcgcaaggcggcaggcgagcttgacgag
cgcatcaccaagcggcttgatcagcttgttgcccacggcctggcgtccgcgcgcggcgac
gacctcctcgatcagcccaccgtctccacctataactcttttgctagttccattgtgagc
gagcgcagtcttttggtggggcgtgagccagactccacggtgattgatgagtctaccgcc
tggcgtcttgctcgccagactgttgtcgcaagtgaggatacccgtttggtatcgctcgat
cggagcgtgggacgtattacagacgccgttcttcacctggaaagagcgatgcgtgagaac
ctgtgtactgcagagcaaattcttgacattgcaaccgaatttgagcggttgctcgacctc
cccatcagtgaaaccggttctaagaaaaccccctacgcctcggtggtaaccgccgttggt
gaggtgtcggctctacaccctctggtggcgcttgccgaacgctatacggaggagaaacga
cggcgcggtttcttggagttttccgatcaagtcgcgctggcgcttgaggtgtgccgccgt
tcgaaggcaaccgtttccgactaccgggccaggcatcgggtgattctgcttgatgagtac
caggatacctcggtggttcagacctggttgttggcagaactctttgcaaaccacggggtc
atggcggtgggagacccgcaccagtccatttacggttggagaggagcaagctcagacaac
ctcaacacctttagtacccagtttgcgcgcgggaactctcggattctgagcctgtcaact
agctggcggaactcccgcgctgttcttgacgtggcaaatcacctggttacaccgctcaca
cagaagtctcgtgtcccggttgaaactctctccgcgcgaccggaggcccccgccggattg
gttcagacggtgtatcccgaaactatcgaggatgaagccactgcagtggctcgctggatg
gcggatcaaatcgcccgggccaccccgcaatccccggtgtctggagcggttatctgccgc
aaccgctccattatgtcccagttttcagatgcacttacgcgcgaaggggtacccaatcgt
atcctggggctcggggggcttctgagtagccccgaggtggtagatatcgtttcgatgctt
cgcactgtgtggtttacggatgcaaactccgccctgatcagaaccctgagcggtcctcgc
tggagaattggtgtgagcgatctggccgctctgcactccgccgcgcggtggcttgttgcg
cacgattggaagcttactccgctcagcgcggagcagcagcggatcaggcgggagtcactc
gcaccagaagacagcgcatcccttattgatgcgcttgatgcggtggctgctgcaactgat
gataagcacgagatgcttcgtggttttagccgggaagggcttcgtcggatacgggaggcg
ggagaggtcatcgccaccattcggtcacgaacctccctcagcatcgcagacctggtgcgc
atcgttgaagttgaattgcgtttggacaccgaggttatggcggtaaccggtcatgtgggg
gccacgggggtggatgttaaggaagcgcagaagcacgcgcgtcgcaatctggatgccctc
tacgatgttattgccaactttgtggctactaatgaagacagcaccctgccgagttttttg
tcttggttggatcacgcagaacggcaggacagctttgcggccagaccggaagctcccgac
cccaacgcggtgcaactgatcactgctcacggtgcaaaagggctcgagtgggatgttgtg
gcggttccgcgcctgtgtgagggtgactttccctctccctcacgctcgggtgcgggatgg
cttcgaattggccagcttcccgatgagcttaagggtgatgccgcctcgctgccctcactt
ccctggagggaagtgcacactcagaaggaatttaacgatctgttgacagagtacaaaaat
caggccagagagcggcaggaaggtgaggagcgccgtctaatctatgttgctaccacccgg
gcgcgggagaggctgttgctctccggttccttctgggcggaacaaaccaggcccagaagt
ccgagtcgcttcctgacggagcttgtgcaggctgggctggtcgcagaggtgccggaatct
tccgagtacagagagaacccgttgaacagcacgcaggcctcatttgagtggccgggggat
ccccttggatctcggcggcctgttgtggaagatgcttctgcgatggtaacccagctgcga
gattcactatccgcagagcagcttatgcgactaatcacccccgacattcgtaacgattta
atactgctgcttgaggaacggcagcgggagaacacccggggagaaggtgcgctgcttccc
cagagaatcaccgcttccggatttaaggattttatttccaatcccgatgagattgtgcgc
cgtatgcgtcgccccgttcctcaaaagccttttgcgcagacccggttgggaacccagttt
cacgagtgggttgaacagagatacgccactccgcgaggaagcgctatcccccttcttgat
gacgttttttctccgtttatcgatccagaacacgatattgatggtgaagcgagcggtgct
gcagacggttcccacgagggagggtcgataacgttagctcagcttcaggccacgttcgaa
gcctcggagtggggcgatcggcagcccgttgaggtggagcgggagatacacattcccttt
gcgggtcgcaccctcgtgtgtaaaatcgacgcggtctactcgcagaatatagagggggtg
gagcattttgagattgttgattggaaaacgggacgggctcctcgcaccgaagcggaaata
gctgagcgtcaactacagcttgcgctctatcgtgttgcctatgccacatggaaaaacatc
gagttggatcgggtcagcgtggctctgtactatgttgcagagaacacaattatccgtccg
acttctctgccttccctggagcagatggagagcatatggtttgcggcggtttcgagtcag
aaccagatgtga
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