Lysinibacter sp. HNR: FrondiHNR_07920
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Entry
FrondiHNR_07920 CDS
T09375
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
lyh
Lysinibacter sp. HNR
Pathway
lyh03030
DNA replication
lyh03430
Mismatch repair
lyh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lyh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FrondiHNR_07920 (holA)
03430 Mismatch repair
FrondiHNR_07920 (holA)
03440 Homologous recombination
FrondiHNR_07920 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lyh03032
]
FrondiHNR_07920 (holA)
03400 DNA repair and recombination proteins [BR:
lyh03400
]
FrondiHNR_07920 (holA)
Enzymes [BR:
lyh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
FrondiHNR_07920 (holA)
DNA replication proteins [BR:
lyh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
FrondiHNR_07920 (holA)
DNA repair and recombination proteins [BR:
lyh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
FrondiHNR_07920 (holA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta_C
DNA_pol3_delta
DNA_pol3_gamma3
Motif
Other DBs
NCBI-ProteinID:
WGD36405
LinkDB
All DBs
Position
complement(1755072..1756115)
Genome browser
AA seq
347 aa
AA seq
DB search
MAKKATKGTTKARGKTVVAIPQLDWSGIRPEPVVLVSGTQPFLADRSLRLLRDMLKVEDP
DIEISDINADSYAAGELATLASPSLFAEPRLIRVFGVEKCTDAFLLDAQKYLKEPAEDTY
LVLRHGGGVRGKALLDAVRRGEGNGIEIVCAEITKDTERYAFAQAEFQRARVKITPGALR
TLVTAFADDIGELASACSQLMSDSADEITEDTVNKYYGGRVETNAFRVADAAIAGRPGEA
LVLLRHSLISGAEPIPLLAAFANKLRTMGRIYGVRGSSGQLASAHGMAPWQVDRARRDLD
GWTEAGLAECIRAIADTDAQLKGGGRDPVYALEKMILLVSRKGRSFS
NT seq
1044 nt
NT seq
+upstream
nt +downstream
nt
gtggcaaaaaaagcgaccaagggaacgaccaaagcgcgcggtaaaacggttgtggcaatt
ccccaattagactggagtggcatccgtcccgaacccgtggtacttgtctcgggaacacag
ccttttttagctgatcgttccctgaggctcctgcgtgacatgcttaaggtggaagatccc
gatatcgagatcagcgatattaacgctgattcctacgccgcgggagaactcgccacgcta
gcgagtccctccctgtttgctgagccccggttaattcgggtgtttggggtggaaaaatgc
accgacgcattcctcctggacgcacaaaaatatctgaaagagccagcagaggacacctat
ctggtgcttcggcacggtggaggcgtgcgaggcaaagccctcctcgacgcggttcgtcgg
ggcgagggaaacggtattgagattgtctgtgcagaaatcaccaaggatacggaacgttac
gcgtttgcgcaggccgagtttcagcgagctcgggtgaagattaccccgggagccctccgg
acgcttgtcaccgcgtttgccgatgatattggcgagttagcttcggcctgctcccaatta
atgtcggatagtgccgatgagattactgaggatactgttaacaagtactacggcgggcgg
gttgaaaccaacgcttttcgcgtggcagacgcggccatcgcggggcgccccggggaggcg
ctagttcttctccgccactctctcattagcggagccgagcctattcccctacttgcagca
tttgcaaacaagctgaggacgatgggaagaatctatggggttcgtggaagctctggacag
ttagccagtgcccatgggatggccccctggcaggttgatcgagctcgccgagacctcgat
gggtggacagaggccggtctggcggagtgtattcgtgcgattgcagataccgacgcccag
cttaagggaggcggaagagatcccgtatacgcgctagaaaaaatgattctcctagtctcc
cggaaaggacgatcctttagctag
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