Lysinibacter sp. HNR: FrondiHNR_08205
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Entry
FrondiHNR_08205 CDS
T09375
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
lyh
Lysinibacter sp. HNR
Pathway
lyh03030
DNA replication
lyh03430
Mismatch repair
lyh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lyh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FrondiHNR_08205 (dnaE)
03430 Mismatch repair
FrondiHNR_08205 (dnaE)
03440 Homologous recombination
FrondiHNR_08205 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lyh03032
]
FrondiHNR_08205 (dnaE)
03400 DNA repair and recombination proteins [BR:
lyh03400
]
FrondiHNR_08205 (dnaE)
Enzymes [BR:
lyh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
FrondiHNR_08205 (dnaE)
DNA replication proteins [BR:
lyh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
FrondiHNR_08205 (dnaE)
DNA repair and recombination proteins [BR:
lyh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
FrondiHNR_08205 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HHH_3
Motif
Other DBs
NCBI-ProteinID:
WGD36459
LinkDB
All DBs
Position
complement(1820926..1824438)
Genome browser
AA seq
1170 aa
AA seq
DB search
MSQTDSFVHLHVHSEYSMLDGAARVKPLIEEAVRQGMPAIAVTDHGNMFGAFDFWNTATN
AGIKPIIGTEAYLTPGTHRGDRTRVKWGSGGGDDVSGAGAYTHMTLLSASQTGMHNLFRL
SSRASIEGYYFKPRMDRELLNQYSEGLIATTGCPSGEVQTRLRLGQYEQARAAAAEFRDI
FGKENFFCEIMDHGIDIERRVMSDLIKLAKDLGLPLVATNDLHYTHAADAESHAALLCVQ
SGSRLDDPNRFKFDANEFYLKTPAEMRQVFRDYPEACDNTLLIAERCETAFDTRANYMPR
FPCPPGENEESWFIKEVETGLHERYPGGIPDNVRKQADYEVEVILQMGFPGYFLVVADFI
NWSKKNGIRVGPGRGSGAGSMAAYAMKITDLDPLQHGLIFERFLNPDRVSMPDFDVDFDE
RRRGEVIKYVTEKYGDERVAQIVTYGTIKAKQAIKDSSRVLGFPYGMGEKLTKAMPPAVM
GKDIPLEGIMDTAHPRYKEAADFRAILEVDSDAQTVFQTARGIENLKRQWGVHAAGVIMS
SDPLIDIIPIMRREQDGQIVTQFDYPACETLGLIKMDFLGLRNLTILDDALDNIRANRNE
NIILEDLDLDDQATYELIARGDTLGVFQLDGGPMRGLLRLMKPDNFEDISAVLALYRPGP
MGANSHTNYALRKNAAQEIIPIHPELEEPLSEVLGGTFGLIVYQEQVMSIAQKLAGFTLA
QADLLRRAMGKKKKSELDKQFETFSQGMRDNGYSDAAVQTLWDILLPFSDYAFNKAHSAA
YGVLSYWTAYLKANFPAEFMAALLTSVGDSKDKLGMYLNECRHMGIQVLAPDVNESLVHF
SAVGTDIRFGLGAIRNVGAQVVENIREAREEKGRFTSFHDFLNKVPLTVLNKRTVESLIK
AGAFDSISPVRRALVEIHEDAVDAASKAKREEANGNFGFDFDSLFDDPAQAEDQVPERPE
WGKKDKLAFEREMLGLYVSDHPLAGLEIALAKHASTTVNDINNPDANLDGEIVTIAGLIT
SVQHRVAKSGNQYGMITVEDFTGEIQVLLMGKSYLEFGPMLQSDSIASVRGKVNARDDGM
SMHAYGVSLPEVEQSEVGAPISITLQDKRATPKTMRELKELLERHSGQNEVRLRLLTSTS
VRIFELPYPVSVNSSFFGDIKGLLGPRCLQ
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
gtgtcacagactgattcttttgttcacttgcacgttcacagcgagtactcaatgctcgac
ggtgctgcgcgggttaaaccgctgatcgaagaggccgttcggcagggaatgcccgccatc
gccgttaccgaccacggcaacatgtttggtgcgtttgatttttggaacaccgcaacaaac
gcgggaatcaagccgattattggtacggaggcctacctcacgccgggaacccaccgcggt
gatcgcacccgggttaaatggggaagcggcgggggagacgatgtttcgggagcaggtgcc
tatacccacatgaccctgctctctgcctctcagacgggaatgcacaatctttttcggctg
tcgagccgtgcctccattgagggatactactttaaaccccgaatggatcgtgagctgctc
aatcagtactccgagggccttatcgccacgacgggctgtcccagcggtgaggtgcagacc
cgccttcgcctgggtcaatatgagcaggcccgggctgcagccgccgagtttcgtgacatc
tttggtaaagaaaatttcttttgcgagattatggatcacggcatcgatattgagagacgt
gtgatgtcggatctcattaagctggccaaagacctgggactgcccttggtcgccacaaac
gatctgcactacacccatgcggcggacgccgaatcgcacgcggccctgctctgtgtgcaa
tccggatcgcgactcgacgaccccaaccgatttaaatttgacgctaacgagttttatctt
aagaccccggccgagatgcgtcaggtttttcgagactatcccgaggcctgcgacaacacc
ctgctgatcgctgagcgctgtgaaacggccttcgatacccgcgcaaactatatgcctcgt
tttccctgccctcccggtgaaaacgaggagagctggtttatcaaggaggtcgagaccggc
ctacacgagcgctacccgggtggtattcctgataacgttcgcaaacaggccgactacgag
gtggaggttatcctccagatgggtttccccggatactttcttgtggttgccgacttcatc
aactggtctaaaaagaacggtattcgagtgggtcccggtcggggttcgggtgccggatca
atggcggcgtacgccatgaaaattaccgaccttgatcccctgcagcacggtctcattttt
gagcgttttcttaacccggatcgcgtgtcgatgccagactttgacgtagatttcgacgag
cgtcgtcgcggtgaggtcattaaatatgtcaccgaaaaatacggtgacgagcgtgtggcg
cagatcgtcacgtacggaactattaaggccaagcaggctattaaagattcctcccgggtg
ctcggttttccctatggcatgggtgaaaagctcaccaaggccatgccgcctgccgtgatg
ggtaaagacatcccactcgagggaatcatggatacggcacatcctcgttacaaagaggct
gccgattttcgggcgattcttgaggtagactccgacgcgcaaacggtttttcaaaccgcc
cgcggtatcgaaaatctcaagcggcagtggggtgttcacgcggccggtgtaatcatgtcg
agcgacccgctgatcgatatcatccccatcatgaggcgcgagcaagacggccagatcgtt
acccagtttgactatccggcctgtgaaacccttgggctcattaagatggattttctgggc
ctgcgcaacctcacaatcctggatgatgccctcgataatatccgggccaaccgcaacgag
aacatcattctcgaagatcttgatctggacgatcaggcaacgtatgagttgattgcacgc
ggagacaccctcggggtgtttcagcttgatggtggcccaatgcgtggcctgctgcggctc
atgaagcccgataactttgaagatatctcggccgttcttgctctctaccggcccggtccc
atgggtgcaaactctcacaccaattatgctctgcgtaagaatgctgcccaggagatcatt
cctattcatccggagctcgaagaacctctcagcgaggtgctgggcggaacgtttggtttg
atcgtttaccaggaacaggtgatgtcaatcgcccaaaaactggctggctttacactggcc
caggccgatcttttgcgtcgggccatgggcaagaagaaaaagtcagagctggacaaacag
tttgagaccttctcacagggtatgcgggataacgggtactcagacgccgctgttcaaacc
ctctgggatattctgctcccattttccgactacgcttttaataaggctcactcggcggcc
tatggcgtcttgagttactggacggcctacctaaaagccaattttccggcggagtttatg
gccgcgctactcacgagtgtgggcgactctaaagataaattgggtatgtaccttaatgag
tgccgccacatgggaatccaggtgctggcgcccgacgtgaacgagtctcttgtacacttc
tccgcggtgggtaccgacatccgctttggcctgggagccatccgtaacgttggtgcgcag
gtggtcgaaaatattcgtgaggcgcgcgaagaaaaagggcgtttcacctcgtttcatgac
ttcctcaataaggttccgcttaccgtactcaacaagcgcaccgtagaatccctcattaaa
gcgggagcgtttgactcgatatctccggttcgtcgcgcgcttgtcgagattcacgaagat
gccgtcgatgccgcgtccaaggccaagcgcgaagaggcaaacggaaattttgggttcgat
tttgatagtctctttgacgatcccgcgcaggcggaggaccaggtacccgagcgtcccgag
tggggcaaaaaagacaagcttgcgttcgagcgggagatgcttgggctctacgtttccgat
catccgctcgcgggtctcgagattgccctagcaaaacacgccagcaccaccgttaacgac
attaacaatccggatgccaaccttgatggtgaaattgtgacgatcgccggtctcatcacg
agcgttcagcacagggttgcaaagtcgggcaaccaatacggaatgatcacggtggaggac
tttaccggggagatacaggtgcttctgatgggcaagtcctatctggagtttggcccgatg
ctgcagagcgactcgatcgcctcggttcgtggaaaggtgaatgcccgcgacgacggcatg
tcgatgcacgcctatggtgtgtcccttcccgaggtagagcagtctgaggtgggggcaccc
atatcgataaccctgcaagataagcgtgccacccccaagacgatgagggagcttaaagag
ttgctggagcgtcattctggacaaaacgaagtacggctcaggctgctcacctccacctcc
gttcgtatctttgagcttccctacccggtctcggtcaactcaagtttcttcggagacata
aaggggcttttgggtccccgctgcctgcagtga
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