Lysinibacter sp. HNR: FrondiHNR_09145
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Entry
FrondiHNR_09145 CDS
T09375
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
lyh
Lysinibacter sp. HNR
Pathway
lyh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lyh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FrondiHNR_09145 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lyh03021
]
FrondiHNR_09145 (rho)
03019 Messenger RNA biogenesis [BR:
lyh03019
]
FrondiHNR_09145 (rho)
Transcription machinery [BR:
lyh03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
FrondiHNR_09145 (rho)
Messenger RNA biogenesis [BR:
lyh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
FrondiHNR_09145 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
AAA_25
NACHT
Spore_III_AA
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WGD36623
LinkDB
All DBs
Position
complement(2029540..2031819)
Genome browser
AA seq
759 aa
AA seq
DB search
MENASNGPHTGDLTTPSDAATNPAETVSAAAEETKEAPKKRAPRRASSATIAETTASTEA
AEVTAAETSADLSETPAKKTTRATRSRATAASSKKNDAATPADDVAADAPEPAAPKKRAS
RAKKATASDAKEATIAEDGAAEALPTKRATRATSKTASTARSDESAEPDTVADSGLSSND
QTAPAEKSEIDTEKKSEKKVTRAKRGRKTAEAAAAEADSSEAIALPEAASDSAVQESVSP
SGTVAAPSDASSDENQSTSNDADSRVGRGARNSRSKSGASTTAEASADAGGVSAAGQAVP
ETSDNGSNNEPRQNRGRNRNRNTQGDDSQDDNSRGSRNGGRGGNDSSEDTSRNSRNRQRD
RKRRGGNNDDFEPEIGEDDVLLPIAGILDVLDNYAFVRTSGYLPGVNDVYVSLGQVKKYN
LRKGDAVVGAIRQPKEGDHSSRQKYNAIVKIDTINGLSVEENEKRVDFNDLTPLYPQERL
RLETSAEKLTQRIIDLVSPIGKGQRGLVVAPPKAGKTIVMQQIANAIATNNPEVHLMVVL
VDERPEEVTDMQRTVKGEVIASTFDRPAEDHTTVAELAIERAKRLVELGHDVVVLLDSIT
RLGRAYNLSTPASGRVLSGGVDAAALYPPKRFFGAARNIENGGSLTILATALVETGSKMD
EVIFEEFKGTGNMELRLSRHLADKRIFPAVDVTASSTRREEMLMGPDEVKVTWKLRRALS
GLDQQQALEAVLSKLKETSSNVEFLMLMQKSGAISSTKE
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
gtggagaatgcctccaacggtcctcatactggcgatttgaccactccgtctgacgccgca
accaatcctgcagaaacagttagtgcagctgcagaggagaccaaagaagctcccaagaaa
cgtgcccctcgtcgggcatcatcggcaacgattgctgaaacaaccgcttccaccgaagcc
gcggaggtcacagccgccgaaacatcagcggacctctccgaaactcccgctaaaaaaact
actcgcgctactcgtagccgtgctactgccgcctccagtaagaagaacgatgcggcaacc
ccagcggatgatgtcgccgcggatgctcctgagcccgccgcccctaaaaaacgtgcgagc
cgtgctaaaaaagctaccgctagcgatgcaaaagaggcgacgattgctgaggatggtgcc
gccgaagccctcccgaccaagcgtgcaacacgggccacctctaagaccgcttccaccgcc
cgaagtgatgagtcagcggaaccggatactgttgcagatagcggcttgtcctcaaatgat
caaacggctcccgctgaaaagagcgagattgatacagagaaaaaatcggagaaaaaagta
acgcgtgcaaaacgtggacgtaagacggccgaggctgcggcggctgaagccgattcctcg
gaagccatcgctctgcctgaagccgcatctgacagcgccgtccaggagtccgtatccccc
agtggcacggttgcagctccaagcgacgcgagttccgatgagaaccaatccacttcgaat
gatgctgattcccgcgtgggtcgtggtgcgcgtaatagtcgtagcaaaagtggcgcatcc
actacagcggaggctagtgccgatgccgggggagtctccgcagccggccaggccgttccg
gagacatccgataacggctcaaataatgagccgcggcaaaatcgtgggcgtaatcgtaat
cgaaacactcagggtgatgactcgcaagacgataattccagaggaagtcgtaacggcggc
cgcggtggcaacgactcaagtgaggatacctcgcgtaactcgcggaatcgccagcgtgat
cgcaaacgtcgtggcggaaataacgatgactttgagcccgagatcggtgaagatgacgta
ttactgccgatcgcgggtatcctcgatgtgcttgataactacgcgtttgttcgcacgagc
ggttatctcccgggagtgaacgatgtatacgtttctctgggacaggttaagaaatacaat
ctgcgtaagggagacgcggttgttggcgctattcgtcagcccaaagagggtgaccacagt
agccgacaaaaatacaacgccatcgttaaaattgacaccattaatggtcttagcgtcgaa
gaaaacgaaaaacgcgttgattttaacgatctcactcccctgtatccccaggagcgtttg
cgtctagaaacatcagctgaaaagctaacacagcgcatcatcgacctggtttcgcccatc
ggtaagggtcagcgcggacttgtggttgcgccgcccaaggcgggtaagaccattgtgatg
cagcagattgcaaacgccattgcaaccaataatcccgaggtgcaccttatggttgtactg
gttgacgagaggcctgaagaggtcaccgatatgcagcgcaccgtgaagggcgaagtgatc
gcttcaacctttgatcgtcccgccgaagaccacaccacggttgccgagcttgctattgaa
cgggctaagcgtctggtcgagcttggtcacgacgttgttgtgttgctcgattcgattacc
cgcttggggcgtgcctataacctgtctactccggcttctggtcgagtgctctccggtggt
gtggatgctgccgcgctctacccgcccaagcgtttttttggtgccgcccgcaatattgag
aacggaggttcacttactattcttgcaaccgctcttgtcgaaactggttccaagatggat
gaggttatcttcgaagagtttaagggaaccggcaatatggaactccgcctgtcgcgtcac
ctggctgataagcgtatcttccccgccgttgacgtcacggcctcaagtactcgccgtgag
gaaatgctgatggggcctgacgaggtgaaagttacttggaagcttcgccgagcgctgagc
ggccttgaccagcagcaggcgcttgaggctgtcttgagtaagctgaaagagacctcgtca
aacgtggaattcctgatgctgatgcaaaagtcgggcgcaatttcttcaacgaaagaatag
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