Lysinibacter sp. HNR: FrondiHNR_09900
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Entry
FrondiHNR_09900 CDS
T09375
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lyh
Lysinibacter sp. HNR
Pathway
lyh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lyh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FrondiHNR_09900 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lyh03021
]
FrondiHNR_09900 (rpoC)
03400 DNA repair and recombination proteins [BR:
lyh03400
]
FrondiHNR_09900 (rpoC)
Enzymes [BR:
lyh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FrondiHNR_09900 (rpoC)
Transcription machinery [BR:
lyh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FrondiHNR_09900 (rpoC)
DNA repair and recombination proteins [BR:
lyh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FrondiHNR_09900 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
WGD36766
LinkDB
All DBs
Position
complement(2173310..2177215)
Genome browser
AA seq
1301 aa
AA seq
DB search
MIDATTLDGLRIGLATSEHIRNWSYGEVKKPETINYRTLKPEKDGLFGEQIFGPSRDWEC
SCGKYKRVRFKGIVCERCGVEVTKSSVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDM
APKDLEKVIYFAAYMVIDIDEEGRHEDMPGLENELRLEIKTLGDQRDAAINERQQRAEND
LAALEADGAKSDQKRRARDAADKEMASIRKSYDEDIARLERVWEEFRNLKVGDLKPEDAV
FNELVDRFGSYFEAFMGAEAIKRRLEDFDLATEAEELRNQIAEGKGQKKIRAIKRLKVVS
SFLQTGGSPASMVLDVVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLRRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGTGNRALKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIIVGPQLKLHQCGLPKQMALELFKPFVIKRLIDLSHAQNIKAAKRMVERSR
PQVWDVLEEIIRERPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCAAFNADFDGDQ
MAVHLPLSVEAQAEARILMLASNNILKPSDGRPVTLPTQDMIIGLHHLTTVMPGAAGEGR
AFSSIAEAILAMDQGTLNINAPVRIRMTDVVFAEGKAPQNYVAGSPVIVDTTLGRALFNE
MLPADYPYFEEVAGKTALSQLVNDLAERYSKVEVAATLDQIKDAGFYWATRSGVTVAISD
VITPSSKKEIVAKYEGQAAKVQSQFDKGLMTDVERRRELVDIWTKATDEVSDAMREAFPE
DNTINRMVSSGARGNWLQIRNIAGMRGLVNNPKGEIIPRPIISSYREGLSVAEYFIATHG
ARKGLADTALRTADSGYLTRRLVDVAQDIIIREEDCDTGRGLELPIAVELDGTLTRDPNV
ENSVYGRTLSADAVDSSGTVIAKSSEDVGDVLIDKLIAAGVTHIKVRSVLTCESAVGVCA
TCYGRSLATGKRVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGSASADDITQGLPRVQEL
FEARTPKGASPIAEAAGRVVIEDSDKGRKVILTPDDGSEEKAYPVLKRATLVVSDGDHVE
IGQPFIAGTLDPKDVLQVGTTENGKHIPGERAVQKYLVEGVQGVYRSQGVPIHDKHIEVI
VRQMLRKVTVVDHGQTELLPGELVDRSHYTRLNREAVMAGKKAATARPEVMGITKASLAT
ESWLSAASFQETTRVLTQAAMEGRRDPLIGLKENVIIGKLIPAGTGLDRYRNMTVEATEE
AKAERYPNRIFVDDANFDEADLSFVDFESFTSDDFNPGTYN
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
ttgatcgacgcaacaactttagacgggcttcggattggcctggctacgtcggagcacatc
cgtaattggtcatacggcgaggtgaaaaagcccgaaacgattaactatcgtacgctcaaa
cctgagaaggacggcctcttcggtgagcagattttcggacccagccgcgactgggaatgt
tcctgtggtaagtacaagcgtgtgcgctttaagggtatcgtgtgtgagcgctgtggcgtt
gaggtcactaagtcctctgtccgtcgtgagcgcatgggccacatcgagctcgccgccccc
gttacacacatctggtacttcaagggtgttccctcacgcctgggatacctgcttgatatg
gcgcccaaagacctcgaaaaggtcatctactttgctgcctacatggttatcgatatcgat
gaagaaggccgtcacgaggatatgcccggccttgagaacgagctgcgtctcgagatcaag
accctgggcgatcagcgtgatgccgccatcaacgagcgtcagcagcgggcagagaatgac
ctggccgcgcttgaagccgatggtgcaaagtccgaccagaagcgtcgcgcccgtgacgcg
gccgataaagaaatggcctcgattcgtaaaagttacgacgaggacattgctcgccttgag
cgggtgtgggaggagttccgcaacctcaaggttggcgacctcaagccggaagatgctgta
ttcaacgagttggtcgaccgctttggtagctactttgaagccttcatgggtgccgaggct
atcaagcgacgtcttgaagacttcgatctagccaccgaggccgaagaacttcgcaatcag
attgccgagggcaaaggccagaagaagatccgcgctattaagcggctcaaggttgtgagc
tccttcctgcagaccggcggaagccccgcctccatggttcttgacgttgtcccggttatt
ccgccggagcttcgccccatggtgcagctcgacggtggacgctttgccacctccgacctt
aacgacctgtaccgtcgtgtgatcaaccgcaacaaccgtctgcgtcgtctgcttgatctc
ggtgcccccgagatcatcgtgaacaacgaaaagcggatgctgcaggaggctgttgacgcg
ctatttgacaatggtcgtcgcggtcgcccggttacgggtaccggaaaccgtgccctcaag
tcactcagtgacatgctgaagggtaagcagggtcgtttccgtcagaaccttctgggtaaa
cgtgttgactactcgggccgttcggtgattattgttggtcctcagctcaagctgcaccag
tgtggtcttccgaagcagatggcactcgaactctttaagccttttgtgatcaagcgtctg
atcgacctgagccacgctcagaacatcaaggctgcaaagcgtatggttgagcgtagccgt
ccccaggtgtgggatgttcttgaagagatcatccgtgaacgtccggttcttctgaaccgc
gcacccactctgcaccgtctcggaatccaggcgtttgagccccagctggttgagggtaag
gccatccagctgcaccccctggtgtgtgccgcgtttaacgccgactttgacggtgaccaa
atggccgtgcatttgcccctatcggtggaggcgcaggccgaggcccgcattctcatgctt
gcctcgaataacatcctcaagccgtcagatggccgtcccgttaccctgcccacgcaggac
atgattatcggattgcatcacctcaccacggtgatgcccggtgccgcgggggagggacgt
gcgttttcctctattgccgaggcaatcctggccatggatcagggaacactcaacatcaat
gcgccggttcgcattcgcatgacggatgtggtctttgccgagggtaaggcgcctcaaaac
tatgttgcgggctctccagttattgttgacacaactctgggtcgcgccctctttaacgag
atgcttcccgctgattacccctacttcgaagaggttgcgggtaagaccgcgctgtctcaa
ctggtcaacgacctggctgagcgctattccaaggttgaggttgcagcaacgcttgaccag
attaaagacgccggcttctactgggctacccgttcgggggtcacggtggcgatctccgat
gtgataacgccctccagtaaaaaggagatcgtggccaagtacgaggggcaggctgctaag
gttcagtcacagttcgacaagggtctgatgaccgacgttgaacgtcgtcgcgaactggtt
gatatctggacaaaagcaaccgacgaggtttcggatgccatgcgcgaggctttccccgag
gacaacaccatcaacaggatggtctcctccggggctcgtggtaactggctacagatccgc
aacattgccggtatgcgtggtctcgtaaataacccgaagggtgagattatcccccgtccg
attatctcgtcataccgtgagggtctttcggttgccgagtactttattgcaacgcacggt
gcgcgtaaaggtctggccgacaccgccctgcgtaccgccgactcgggatatctcacgcgt
cgtcttgttgacgtcgcgcaggacatcattatccgcgaggaagactgtgataccggacga
ggactggaactccccattgcggttgagcttgacggcacgctcacgcgtgaccccaacgtt
gagaactcggtctacggacgcacactgtccgcggacgccgttgattcctcgggcacggtt
atcgccaagtccagtgaggacgttggtgacgttttgatcgacaagctcattgcggctggt
gtaacacacatcaaggttcgctcggttctcacctgtgagtcggctgttggagtgtgcgca
acctgctacggtcgttcgcttgcaacgggtaagcgtgtagacattggtgaggccgtgggc
attatcgcggctcagtcgattggtgaacccggaacccagctcacgatgcgtaccttccac
acgggtggttcggcctcagctgacgacatcacgcagggtctcccgcgtgtgcaggagctc
tttgaggctcgtacccccaagggcgcctcgccgatcgcggaggctgccggtcgtgtggta
atcgaggacagcgacaaggggcgtaaggttatcctcacccccgacgacggaagcgaagaa
aaggcataccccgttctcaagcgtgcaaccctggttgttagcgatggtgatcacgttgaa
atcggacagccctttatcgcgggaaccctcgatcccaaggatgttctgcaggtgggtact
actgagaatggcaagcacatccccggtgagcgtgccgtacagaaatacctggttgagggc
gtgcagggagtctatcgttcacagggtgtgcctatccacgataagcacattgaggttatc
gtccgtcagatgctccgtaaagtaaccgtggttgatcacggccagaccgagctgctgccg
ggtgagctggttgatcgctcgcactacacccgtctgaaccgcgaggccgtgatggcgggc
aagaaggctgccacggctcgtcctgaggttatgggtatcaccaaggcctctctagcaact
gaatcgtggctatccgctgcatcgttccaggagaccacccgtgtgctcactcaagccgct
atggagggtcgccgcgatcctctgatcgggctcaaggaaaacgttattatcggtaagttg
atcccggctggaactggtttggatcgctaccgtaatatgacggttgaggcgaccgaggag
gcaaaggcggagcgttacccgaaccgtatctttgttgacgatgccaattttgatgaggct
gacctgtcatttgttgacttcgagagcttcacctcggacgattttaatccgggaacctac
aactag
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