Lysinibacter sp. HNR: FrondiHNR_11150
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Entry
FrondiHNR_11150 CDS
T09375
Name
(GenBank) DEAD/DEAH box helicase
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
lyh
Lysinibacter sp. HNR
Pathway
lyh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lyh00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
FrondiHNR_11150
09124 Replication and repair
03420 Nucleotide excision repair
FrondiHNR_11150
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lyh03021
]
FrondiHNR_11150
03400 DNA repair and recombination proteins [BR:
lyh03400
]
FrondiHNR_11150
Enzymes [BR:
lyh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FrondiHNR_11150
Transcription machinery [BR:
lyh03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
FrondiHNR_11150
DNA repair and recombination proteins [BR:
lyh03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
FrondiHNR_11150
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
Helicase_C
ResIII
DEAD
MRP-S22
Motif
Other DBs
NCBI-ProteinID:
WGD36989
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All DBs
Position
2441128..2442783
Genome browser
AA seq
551 aa
AA seq
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MSTGPLIVQSDRTVLLEVAHPDAEDARHDIAVFAELERAPEHMHTYRITQLGLWNARAAG
HTADEILGTLTRYSKFDVPQSVVIDITETIGRYGRLVIERSPEGQLIIRSEDEAALNQIS
RSKRISSLLGERVAPDTFAIEPWARGQLKQELVKQGWPAEDRAGYTPGKPHEISLTDDWQ
LRGYQLKAIENFQNGGSGVVVLPCGAGKTLVGAGTMSAIGTTTLVLVTNTVSARQWRDEL
LRRTDLTEEDIGEYSGQLKEIKPVTIATYQILTAKRGGVYTHLSVLDALDWGLIVYDEVH
LLPAPIFKLTADLQARRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKEIEAQGYISPA
ECFEVRVDLPQATRLEYAAAADNERYRLAATAPAKLDTVRHLLKKHEGEQILIIAQYLDQ
IEEIANTLELPSLTGSTPVAEREELFQQFREGTIKVLVVSKVANFSVDLPDASVAIQVSG
SFGSRQEEAQRLGRLLRPSSTGHSASFYTLIARDTVDQDFAQNRQRFLAEQGYSYTILDA
SAVVSATELTR
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
atgtctaccggaccactcattgtgcagagcgaccgaaccgttcttcttgaggtcgctcat
cccgacgcagaagatgcacggcacgatatcgccgtgtttgccgaactcgaacgtgcaccc
gaacacatgcacacctaccgcatcacgcagctgggtctgtggaacgcgcgtgcggcagga
cacaccgccgacgagatccttggcacactcacgcgatactcaaaatttgatgttccccaa
tcggttgtgatcgacatcaccgaaaccatcggccgttatgggcgcctcgttatcgaacga
agccccgagggacaattaatcattcgctcggaagacgaagccgcactaaaccagatctca
cgcagcaaacgtattagttctttactcggcgaacgggtagcgcccgacacatttgcgatt
gaaccctgggctcgtggccagcttaaacaggagttggtcaagcagggttggcccgcggag
gaccgagccggttacactcccggaaaaccccacgagatatccctcactgatgattggcaa
ctgcgcggataccagctcaaagctattgaaaattttcagaacggcggttccggtgtggtg
gttctcccctgcggtgcgggtaaaaccctggtgggagcgggaactatgtcggcaatcggc
acaacaaccctggtcctggttaccaatactgtctcggcaagacagtggcgtgacgagcta
ctcagacgcaccgacctcaccgaggaagacatcggcgagtattcgggccagctgaaagag
atcaagcccgtgaccatcgccacctatcaaatactcacggctaagcggggaggagtgtac
acccacctctccgtgcttgatgcgcttgactggggtctgatcgtctacgacgaggttcac
ctcctacccgcccccatttttaaactcaccgcagacctacaggcacgccgccgcctaggt
ctcactgcaacactcgtccgtgaggatggccgggagggagatgttttcagcctgatcgga
cccaaacgctacgatgctccctggaaagagattgaggcacaggggtatatttctcccgcc
gaatgctttgaggttcgtgttgaccttccacaggctacccgcctggagtacgctgctgcg
gccgacaacgaacgctaccgcctcgccgcaactgctcccgccaagctagacacggttcgt
cacctcctcaagaaacacgagggagaacagatcctcatcattgcccagtatcttgaccag
attgaagagatcgcaaacacactcgaactccccagcctcaccggctcaactccggtcgcc
gagagagaagaactcttccagcagttccgcgagggcacgattaaagttcttgttgtcagc
aaggtcgcaaacttctcggttgacctcccggatgcctcggttgcaatccaggtttccgga
tcctttggttcgcgccaggaggaggcacaacggctcggtcggctactgcgcccgagcagc
acgggccactcggcatcgttctacaccctcattgcccgcgatacggttgatcaagatttc
gcccagaatcggcagcgttttcttgccgagcagggatactcctatacgattctcgatgcg
tccgctgttgtgtccgccacagaacttacacgataa
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