Lysinibacter sp. HNR: FrondiHNR_11630
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Entry
FrondiHNR_11630 CDS
T09375
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
lyh
Lysinibacter sp. HNR
Brite
KEGG Orthology (KO) [BR:
lyh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lyh03032
]
FrondiHNR_11630 (topA)
03400 DNA repair and recombination proteins [BR:
lyh03400
]
FrondiHNR_11630 (topA)
Enzymes [BR:
lyh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
FrondiHNR_11630 (topA)
DNA replication proteins [BR:
lyh03032
]
Prokaryotic type
DNA Topoisomerases
FrondiHNR_11630 (topA)
DNA repair and recombination proteins [BR:
lyh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
FrondiHNR_11630 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
HC2
Toprim_4
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
WGD37076
LinkDB
All DBs
Position
complement(2552897..2555785)
Genome browser
AA seq
962 aa
AA seq
DB search
MPSTKKLVIVESPTKAKTIGAYLGDEYEVVASVGHIRDLAEPSELPADMKKGPFGKFAVD
IENNFSPYYVVAENKKKTVSELKRALKAADEVWLATDEDREGEAIAWHLLEVLKPKVPVR
RMVFHEITQEAIEYAKKNTRDIDLSLVDAQETRRILDRLYGYDLSPVLWRKVAPRLSAGR
VQSAATRLVVDRERERLAFVSANYWDLTGMFDTARDGVDDTFSARLVRLDGRPIATGRDY
DDRGELTKKASEAGVVSLTETAATELVDQLREEQVPIAVTSLETKPYSRRPAAPFTTSTL
QQEASRKLRFTSRQTMSTAQALYERGFITYMRTDSPSLSAQAINAARTQAAKLYGAETVP
EAPRLYKGKSKGAQEAHEAIRPAGETFRSPSEAASSLTGNELKLYELIWKRTVASQMADA
KGSTATVTVAAGPTSEKKTAEFTASGTVITFRGFLLAYEEGTDEKRHAVSSGSDEKLPVL
ETGQKLVLAEIEAKGHDTLPKPRYTEASLTKKLEELGIGRPSTYTAILSTIMDRGYVSKR
GEALVPSWIAFSVVRLLEEHFTELVQYDFTATMENDLDRIAAGSEDRNEWLNGFYFGNEE
HPGLRSIVDNLGEIDARAINSIAVTDTITLRIGKYGPYLEVPDENGTLTEEGSVALRRVN
IPEGLAPDELTAAKAQELVDAPVVVDRVIGVNPETGKNIVAKDGRFGPYITEVEPEPEEA
PAKKSKTAPKPRTASLFKSMDLETIDLETALTLLNLPRTVGQDPESGEDITAQNGRYGAY
LKKGTDTRSLPNEDAILSIDLPGALELFSQPKYGARKASSALKEFEADPVSGKPIKVKDG
RFGPYVTDGETNATIPRGDDVDGITFERAVELLEIKRAKGPAKPRAKKAVAKKTTAKKPA
AKTTATKTAAAKATTAKKATAAKASPAKKTTTKASAAKTAGTKTSTTKKPATKKADVEGS
AE
NT seq
2889 nt
NT seq
+upstream
nt +downstream
nt
gtgccgagcacgaagaagttggtgattgtcgagtcacccaccaaggcaaaaaccattggg
gcctacctgggtgacgagtatgaggttgtcgcttcggtcggtcacattcgtgatttggct
gagccgtctgagcttccggcagacatgaaaaaaggtccgtttggtaagtttgccgtggac
attgagaataacttcagcccgtactatgttgtcgcggaaaataaaaagaaaacggtttcc
gaactgaagcgggcgctgaaggccgcggatgaggtgtggctcgcaactgatgaagaccgc
gagggtgaagcaattgcgtggcacctcctagaggttctcaaacccaaagttccggtacgc
cgcatggtcttccacgagatcactcaggaggctatcgaatacgcaaagaagaacacgcgt
gatattgatctctcgctcgtagatgcgcaagagactcgccgtattctcgatcgcctctac
ggatacgatctttcgcccgtcctgtggcgcaaagttgcgccgaggctttctgccgggcga
gtacagtcagcggcgacacggcttgttgttgatcgcgagcgcgaaagactagcgtttgtt
tccgcaaactactgggatctcacgggtatgtttgacacggcgcgtgacggtgtggatgac
acattctctgcgcggctggtacgtcttgacggtcgccctattgccaccgggcgagactac
gatgaccggggggaactcaccaaaaaggcatccgaagcgggtgttgtctccctcaccgag
accgctgcgacggaactggtggatcagcttcgcgaggagcaggttcccatagcggttacc
tctctcgagaccaaaccctactcgcggcgtcccgccgctcccttcaccacgtcgacactt
cagcaggaagcatcccgtaagctcagatttacgtcgcgtcaaaccatgtcaaccgcgcag
gctctttacgaacgtgggtttatcacctatatgcgtacggactctccctccctttctgct
caggctattaatgccgcgagaacgcaggccgctaagctttacggagcagaaaccgttccc
gaggccccgcgtctttataagggtaaaagcaagggagcacaggaggctcacgaggcaatt
cgccccgccggggagacgttccgttccccctctgaggcagcatcatcactcaccggaaac
gagcttaagctatacgagctgatctggaagcgaacggttgcctcgcagatggcggacgcc
aaaggttccacggcaacagttacggttgctgcgggccccacctctgagaaaaaaaccgcc
gagtttacagcgagcggaactgttattacgttccgtggatttttgctcgcctacgaagag
ggcaccgatgaaaaaaggcacgcggtctcttccggttctgacgaaaagcttcccgttctt
gagacgggccagaaactcgttctcgcagagatcgaggcaaagggacacgacacccttccc
aaacctcgctacacggaggccagcctcacaaaaaagctcgaagagctgggtataggacgg
ccctcaacgtacaccgcaatcctttcaaccattatggatcgtggttatgtgagtaagcga
ggcgaggcgcttgtgcccagctggatcgccttttcggtggtgcggctcctcgaagagcac
tttacggaactcgtgcagtacgatttcaccgccaccatggagaacgatctagaccgtatc
gcggctggctctgaggatcgtaacgagtggctaaacggtttttactttggtaacgaagaa
catccggggcttcgaagcattgttgataacctgggtgagattgatgcccgagcgatcaac
tcaattgctgtaaccgacaccatcacgcttcgtattggaaaatacggtccctaccttgaa
gttcccgatgagaacggtacccttaccgaggaggggagcgtggcccttcgccgcgtgaac
attcccgagggccttgctcccgatgagcttaccgcggccaaagcccaagaactggtggac
gcacccgtggtcgtggaccgcgtgattggggttaacccagaaacgggcaaaaatatagtg
gccaaagacggacgctttggcccctacatcaccgaggtcgaaccagaacctgaggaggcg
cccgctaaaaagagcaaaacggctcccaaaccgcgcaccgcatcgctgtttaaatccatg
gatttagaaactatcgatctggagacagcactcaccctgcttaatctgcctcgaacggta
ggtcaagaccccgagagcggtgaggacatcaccgctcaaaacggtcgttacggtgcctac
cttaaaaaaggaaccgatactcgttctcttcccaatgaagacgccatcctcagcattgat
ctgcccggggcgcttgaactcttctcgcagcccaaatatggtgcacgcaaggcttccagc
gcgctcaaagaattcgaggcggacccggtgagcggtaaaccaatcaaggtgaaagacggt
cgttttggcccttacgtcaccgacggtgaaaccaatgccaccattccccggggcgatgac
gtcgatggtattacttttgaacgtgccgttgaactgttagagattaagcgtgctaaaggt
ccggcaaaaccccgggcaaaaaaagcggtggcaaaaaagaccacggctaagaaaccggcg
gcaaaaacaacggctacaaaaacagccgcggcaaaggccaccaccgccaaaaaggcgacg
gcggcaaaagcatctccggcaaagaagaccacgacaaaggcgagtgccgcaaaaaccgct
ggcacaaagacctccaccacaaaaaagccagcaacaaaaaaagctgatgtggagggaagc
gcagagtga
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