Lysinibacillus sp. BS3: AAJG31_10770
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Entry
AAJG31_10770 CDS
T11289
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
lyi Lysinibacillus sp. BS3
Pathway
lyi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lyi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AAJG31_10770 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lyi03021
]
AAJG31_10770 (rho)
03019 Messenger RNA biogenesis [BR:
lyi03019
]
AAJG31_10770 (rho)
Transcription machinery [BR:
lyi03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
AAJG31_10770 (rho)
Messenger RNA biogenesis [BR:
lyi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AAJG31_10770 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
S1CSD-TOTE-2
NACHT
ATPase_2
AAA
AAA_22
DUF3418
AAA_25
Spore_III_AA
AAA_24
Motif
Other DBs
NCBI-ProteinID:
XAO93830
LinkDB
All DBs
Position
complement(2147734..2149017)
Genome browser
AA seq
427 aa
AA seq
DB search
MSALTIAQLENMTLKELYALARQYKISYYSKLTKKELIFAILKTRSEQEGYFFMEGVLEI
VSQEGFGFLRPINYSPSKEDIYISASQIRRFDLRNGDKVSGKVRPPKENERYYGLLQVDA
VNGEDPEVAKERVHFPALTPLYPNRQIKLETTQRNLSTRIMDLVAPVGFGQRGLIVAPPK
AGKTSLLKEIANAITTNHPQAELIVLLIDERPEEVTDIERSVNADVVSSTFDEVPENHVK
VAEIVLERARRLVEHKRDVIILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFF
GSARNIEEGGSLTILATALVDTGSRMDEVIYEEFKGTGNLELHLDRQLAERRIFPALDIR
RSGTRKEELLLEPEQLEKLWAIRKTFSDAPDFAERFLKKIRTTKSNEEFFEKLNEDMKKA
TKGKGLL
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcattgacaatcgctcaattagaaaacatgacgttaaaagagctttacgccctt
gcacgccaatataaaatttcttattatagcaagctaacgaaaaaagaattgatatttgct
attttgaaaacgcgttcagagcaagagggctatttctttatggaaggcgtactagaaatt
gtttcgcaagagggcttcggcttccttcgaccaatcaactactcaccaagtaaagaagat
atttatatttctgcatcccaaatccgtcgctttgatttgcgtaatggggacaaggtgtca
ggaaaggtgcgtccaccgaaggaaaatgagcgctattatggcctattacaagtagatgct
gtcaatggcgaagatcctgaagtggcgaaagaacgagttcatttcccagcactaacacct
ttatatccaaatcgacaaattaaactagaaacaacacaacgcaatttatccacacgtata
atggatttagtggcaccagtaggctttggacaacgtgggttaattgtagctccgccaaag
gcagggaaaacgtctttattaaaagagattgcgaacgctattacaaccaatcatccgcaa
gcggagttaattgtcctattgattgatgaacgacctgaggaagtgacagatattgaacgt
tctgtcaatgcagatgttgtaagctcaacatttgatgaagtacctgagaaccacgtcaaa
gtggctgaaatagtattagaacgcgcacgacgtttagtggaacataaacgtgatgtaatt
attttaatggactctattacacgtttagctcgtgcttataacttagtaattccaccaagt
ggacgtacactatctggtggtattgatcctgctgcattccatagaccgaaacgtttcttt
ggttcggctcgtaatattgaagaaggcggtagtttaacaattttagcgacggctttagtg
gatacaggttctcgtatggatgaagttatctatgaagaatttaagggaacagggaactta
gagcttcatcttgatcgtcagttagcggaacgccgtatattccctgcgcttgacattcgt
cgttcgggtacacgtaaagaagagcttcttctggaaccagaacaacttgaaaagctatgg
gcaattcgtaaaacgttttctgatgcacctgattttgcagagcgcttcctgaaaaaaata
cgtacaacaaaatcaaatgaagaattttttgaaaagctaaacgaagatatgaaaaaagca
acaaagggtaagggacttttataa
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