Marilutibacter alkalisoli: FKV23_06090
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Entry
FKV23_06090 CDS
T06167
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lyj
Marilutibacter alkalisoli
Pathway
lyj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lyj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FKV23_06090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lyj03400
]
FKV23_06090
Enzymes [BR:
lyj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FKV23_06090
DNA repair and recombination proteins [BR:
lyj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FKV23_06090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
AAA_30
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QDH69715
UniProt:
A0A514BQX6
LinkDB
All DBs
Position
complement(1379722..1383207)
Genome browser
AA seq
1161 aa
AA seq
DB search
MNDPASAFPTPPLPRTGQQRAWWRAPASPSALAWHIAAAARAHGGPLLAITRDNHGAHQL
ESDLHTLIGDDGTLPVLPFPDWETLPYDVFSPHPDIVSQRLAALHRLPTLERGIVVVPVQ
TLMQRLAPKRHVIGGSFDLAVGQRLDLDAEKRRLESAGYRHVPQVLDPGDFAVRGGLLDV
FPMGATQPFRVELLDDEIDTIRGFDPETQRSLERIDAVRMLPGREMPLDEAARGRALDTL
RERFDLDARNSALYQDLKAGVAPGGVEYYLPLFFGGDASGTTATLFDYLGDNVLPMVGDG
VNEAAEAFWKQTGERFEQRRHDIERPVLPPAELYLSPDMLREALNRGDRIEVCGESHPQR
ERAAALGDQPAPSLPLAAKDAAPAEALKSFLSSYPGRVLIAADSPGRREALLEVMDAAAL
KPDVESDWGAFAASDTRFAIAVAPFDDGFALTQPAIAILTERQLFPERVSQPRRRRRAGR
EPEAIIRDLGELTEGAPIVHEDHGVGRYRGLVVLEAGGQPGEYLEIEYAKGDRLYVPVAQ
LHLINRYSGAAIETAPLHSLGGEQWSKAKRKAAEKVRDVAAELLEIQAKRQARAGLAIEV
DRAMYEPFAAAFPFEETPDQHSSIEAVIRDLGSSQPMDRVVCGDVGFGKTEVAVRAAFVA
AANGKQVALLVPTTLLAEQHYRNFQDRFADWPLRVEVLSRFKSTKEIKAELDKLAEGKID
VIVGTHRLLQKDVRFKDLGLVIVDEEQRFGVRQKEALKALRANVHLLTLTATPIPRTLNM
AMAGLRDLSIIATPPAHRLAVQTFVVPWDDAQLREAFQRELSRGGQVYFLHNDVESIGRM
QRELQELVPDARIGIAHGQMPERELEKVMLDFHKQRFNVLLCSTIIESGIDIPNANTIII
NRADKFGLAQLHQLRGRVGRSHHRAYAYLVIPDKRSITPDAQKRLDAIASMDELGAGFTL
ATHDLEIRGAGELLGEGQSGQMAEVGFSLYTELLERAVRSIKQGKLPDADEAEARGAEIE
LHIPALIPEDYLPDVHTRLTLYKRISSARDKEALREMQVEMIDRFGLLPETAKQMFAVAE
LKLDATALGIRKLDLGANGGRVQFVEKPNVDPMAIIKLIQGQPKSYRMDGPDKLRMTLDL
PDAATRLAAAKGLLLMLGKGG
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atgaacgatcccgcttctgccttccccaccccgccattgccccgaaccggccagcaacgc
gcctggtggcgcgcacctgcatcgccatccgcgctggcctggcacatcgccgcggcggcg
cgcgcgcatggcggtccgctgctggcgatcacgcgcgacaaccacggcgcgcaccagctc
gaatccgacctgcacaccctgatcggggacgacggcaccctgccggtgctgccgttcccg
gactgggaaaccctgccctacgacgtcttcagcccacacccggacatcgtcagccagcgg
ctggccgcattgcaccgactgccaacgctggagcgcgggatcgtggtggtacccgtgcag
acgctgatgcagcggctggcaccgaagcggcacgtgatcggtggcagtttcgatctcgcg
gtcggccagcgcctcgacctcgatgccgaaaagcgccggctcgaatcggccggctaccgg
catgtgccgcaggtgctcgacccgggcgatttcgcggtacgcggcggcctgctcgacgtg
ttcccgatgggcgcgacgcagccgttccgggtcgagctgctcgacgacgagatcgacacc
atccgcggcttcgaccccgagacccagcgttcgctggaaagaatcgacgcagtgcgcatg
ttgcccggccgcgagatgccgctggacgaggccgcgcggggacgcgcgctcgacaccctg
cgcgagcgcttcgacctcgacgcccgcaacagcgcgctataccaggatctgaaggccggc
gtggctcccggcggcgtggagtactacctgcctctgttcttcggtggggatgcttccgga
acgacggcgaccctgttcgactatctcggggacaacgtcctgccgatggtcggcgacggt
gtgaacgaagccgccgaagcgttctggaaacagaccggcgaacgcttcgagcagcgccgt
cacgacatcgaacgcccggtactgccgccggccgagttgtacctgtcgcctgacatgttg
cgcgaggcgttgaacaggggcgaccggatcgaggtctgcggcgaatcgcatccgcaacgc
gaacgcgcggccgctcttggcgaccagcccgcaccgtcgttgcctctggcagcgaaggat
gccgcaccggctgaagcattgaaatcgttcctgtcgagctatcccggccgggtgctgatc
gctgcggattcacccggccgtcgcgaggcattgctggaggtgatggatgcggccgcactg
aaacccgacgtcgaatccgactggggcgcatttgccgcaagcgataccaggttcgcgatc
gccgtcgccccattcgacgatggcttcgccctgacccaaccggcgatcgccatcctcacc
gagcgccagttgttccccgagcgcgtcagccagccacgccggcgccgccgtgccggccgc
gaacccgaagcgatcatccgcgacctcggcgaactgaccgaaggcgcgccgatcgtccac
gaggaccacggcgttggccgctaccgcgggctggtggtactggaggctggcggtcagcct
ggcgaatacctcgagatcgagtacgccaagggcgaccgcctgtacgtgccggtcgcgcaa
ttgcacttgatcaaccgctactccggcgctgcgatcgaaaccgcgccgctgcattcgctc
ggcggcgagcagtggtcgaaggccaagcgcaaggccgccgagaaagtccgcgacgtcgcc
gccgaactgctggagatccaggccaagcggcaggcccgggccgggctcgcgatcgaggtc
gaccgcgcgatgtacgagccgttcgccgcggccttcccgttcgaggaaacgcccgaccag
cactcctcgatcgaagcggtgatccgcgatctcggctccagccagccgatggaccgggtc
gtctgcggcgacgtcggcttcggcaagaccgaggtcgccgtgcgcgcggccttcgtcgcc
gccgcaaacggcaaacaggttgcgctgctggtgccgaccaccctgctggccgagcaacac
taccgcaacttccaggaccgcttcgccgactggccactgcgggtggaggtgctgtcgcgc
ttcaaatcgaccaaggagatcaaggccgaactcgacaagctcgccgaaggcaagatcgac
gtgattgtcggcacccatcgcctgctgcagaaggatgtgcgcttcaaggacctgggcctg
gtcatcgtcgacgaggaacaacgcttcggcgtgcgccagaaggaggcgctgaaggcactg
cgcgcgaacgtgcatctgctgaccctcaccgccacgccgatcccgcgcacgctcaacatg
gcgatggccgggctgcgcgatctgtcgatcatcgccaccccgcccgcgcaccggctcgcc
gtgcagaccttcgtcgtgccctgggacgatgcccagctgcgcgaggcgttccagcgcgaa
ctgtcgcgcggcggtcaggtctacttcctgcacaacgacgtcgaaagcatcggtcgcatg
cagcgcgaactgcaggaactggtgccggatgcgcgtatcggcatcgcccacggccagatg
cccgagcgcgaactggaaaaggtaatgctcgacttccataagcagcgtttcaacgtgctg
ttgtgctcgaccattatcgagtccggcatcgacatccccaacgccaataccatcatcatc
aaccgcgccgacaagttcggcctggcccagctgcaccagctgcgcggccgtgtcggtcgc
agccaccatcgcgcctacgcctacctggtcattcccgacaagcgctcgatcaccccggac
gcgcagaagcggctggacgcgatcgcatcgatggacgagctcggcgccggcttcaccctc
gccacccacgacctagagatccgcggcgccggcgagctgctcggcgaaggccagagcggg
cagatggccgaggtcggcttcagcctctacaccgagctgctggagcgcgccgtacgctcg
atcaaacaaggcaagctgccagatgcggacgaagccgaagcgcgcggtgccgagatcgag
ctgcacatccccgcgctgatccccgaggactacctgcccgacgtgcacacccgcctgacc
ctctacaagcgcatcagcagtgcccgcgacaaggaggcgctgcgcgagatgcaggtggag
atgatcgaccgcttcggcctgctcccggagaccgcgaagcagatgttcgccgtcgccgaa
ctgaagctggacgcgaccgcgctgggtatccgcaagctcgacctcggcgcgaatggcggc
cgcgtgcagttcgtcgaaaaacccaacgtcgatccgatggcaatcatcaagctgatccag
ggtcagccaaagtcgtaccggatggatgggccggacaagctgcggatgacgctcgacctg
ccggacgccgcgacgcgactggccgcggcgaagggactgttgctgatgctcggcaagggc
ggctga
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