Marilutibacter alkalisoli: FKV23_11370
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Entry
FKV23_11370 CDS
T06167
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
lyj
Marilutibacter alkalisoli
Pathway
lyj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lyj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FKV23_11370 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lyj03019
]
FKV23_11370 (rnr)
03016 Transfer RNA biogenesis [BR:
lyj03016
]
FKV23_11370 (rnr)
Enzymes [BR:
lyj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
FKV23_11370 (rnr)
Messenger RNA biogenesis [BR:
lyj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FKV23_11370 (rnr)
Transfer RNA biogenesis [BR:
lyj03016
]
Prokaryotic type
tRNA degradation factors
FKV23_11370 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
HTH_20
Motif
Other DBs
NCBI-ProteinID:
QDH70610
UniProt:
A0A514BTA3
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All DBs
Position
complement(2593827..2596475)
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AA seq
882 aa
AA seq
DB search
MALPAMRQRTPLRRGFFVVLLQIEGKAPGLLDDRGAGGRVRVRFPANRSGAQAAAPDLHA
GIAPVCDHSHMTKKTPTRGTSGKRNAGKTGTSKTGAGRKTGKKLPGWMPEPPPKGFKPQG
SAKPAVPGHDPHAQREAARYDNPIASREMILQVLTAADGPMSADALAERLSLVEPERFDA
LNARLRAMVRDGQLLRNRKGAFAPAEQMDLVPGVVIANPDGFGFLRPDAGGDDLFLPPFE
MRKAMHGDRVMACVTGMDRRGRLEGAIVEVLERRLNRLLGRFTEEVGITYVIPDDPRIQR
NVMIPAEARGEARPGQLVVAEITQPPDARRPPIGRILTVLGERLTASLAVQAALHGHDIP
HEFPQEVIDQATAVPLEVDAQATLTPAPLPRTGKGLGRVDIRDLPLVTIDGEDAKDFDDA
VWCEPNRDGFRLVVAIADVSHYVRPGTPLDDEAQLRATSVYFPGFVVPMLPETLSNGICS
LKPKVDRLCFVCDMQVDREGAVADSRFYEAVMHSHARLTYTQVWNAVGDGIPEEDRSAAL
AVVGDRLPQIQQLHQLYRVLAKARERRGAIEFESGEVRFVLDNTGEVVQAGMLQRNDAHK
LIEECMIAANVEAARFLLAQDVPAPYRIHERPPEQKYADLQEFLKEFKLRMPPWPKVQPR
DFTNLLKKIRERPDATLLESVLLRSQSLAVYSPDNHGHFGLALEAYAHFTSPIRRYPDLM
VHRAIKHALSGASAEKFIYTPAQMAALSLQCSERSRRADEAQREVDERYRAAWMEQHVGG
EFSGVISGVTSFGLFIELDDSKVNGLVHVTQLPNDYYHFDPIRKTLTGQRGGREFRLGDR
VDIIVMKASVEDRKIDFKLVEERGVKSLPPRGQPAKRNKQKY
NT seq
2649 nt
NT seq
+upstream
nt +downstream
nt
atggcactaccagccatgcgacaaagaaccccgctccggcggggtttttttgtggttctt
ctccagatcgaggggaaagcgccggggctgttggatgaccggggcgctgggggcagagta
cgcgttcgcttcccggcaaaccgttccggggcacaagcagcggccccggacctccacgcc
ggcatcgcaccggtgtgcgaccattcgcacatgacaaagaaaaccccaacccgggggaca
tcgggcaagagaaacgccggcaagacgggcacgagcaagacaggtgcaggcaggaagacc
gggaagaagctcccgggctggatgccggaaccgccgccgaagggcttcaagccgcaagga
tcggcaaagcccgcggtgcctggccacgatccgcatgcccagcgtgaagcggcccgctac
gacaacccgatcgccagccgcgagatgatcctgcaggtgctgacggccgcggacggtccg
atgagcgccgatgcgctggccgaacggctgtcgcttgtcgagccggagcgcttcgatgcc
ctcaacgcgcggctgcgggcgatggtccgcgacggccagctgctgcgcaatcgcaagggc
gcgttcgcccccgccgagcagatggacctggtgccgggcgtggtgatcgccaatccggac
gggttcggcttcctgcgtccggatgcgggcggcgacgacctgttcctgccgccgttcgag
atgcgcaaggcgatgcacggcgaccgggtgatggcctgtgtcaccggcatggaccggcgc
ggccgcctcgaaggcgcgatcgtcgaggtgctcgagcgccggctcaaccgcctgctcggc
cggtttaccgaagaagtcgggatcacctacgtgatacccgatgacccgcgcatccagcgc
aacgtgatgatcccggccgaggcccgtggtgaagcgcgccccggccaactggtagtggcc
gagatcacccagccgccggatgcccgccgcccgccgatcggccgcatcctgaccgtgctc
ggcgaacgcctgaccgcctcgctggcggtgcaggcagcgctgcatgggcacgatatcccg
cacgagttcccacaggaggtgatcgaccaagccaccgcggtgccgcttgaggtcgatgcg
caggcgaccctcaccccagcccctctcccgcggacgggaaaggggctgggccgtgtcgat
atccgcgacctgccgctggtcaccatcgacggcgaggacgccaaggacttcgacgacgcg
gtctggtgcgaaccgaaccgcgacggttttcgtctcgtggtcgcgattgccgacgtgtcg
cactacgtgcggcccggcacaccgctcgatgatgaggcgcagctgcgcgcgacctcggtc
tacttccccggcttcgtcgtgccgatgttgccggagacgctgtcgaacggcatctgctcg
ttgaagcccaaggtcgaccgcctgtgtttcgtctgcgacatgcaggtcgaccgcgaggga
gcagtcgcagattcgcgtttctacgaagcggtgatgcattcgcatgcccggctgacctac
acccaggtctggaacgcggtgggcgacgggatccccgaggaggaccgctccgcggcgctg
gccgtggtcggcgaccggttgccacagatccagcagctgcaccagctgtacagggtgctc
gccaaggcgcgtgagcgtcgcggggcgatcgagttcgagagcggtgaggtccgcttcgtg
ctcgacaacactggcgaagtggtgcaggccggcatgctccagcgcaacgacgcgcacaag
ctgatcgaggagtgcatgatcgccgccaatgtcgaggcggcgcgtttcctgctcgcccag
gacgtgccggcgccgtaccgcatccacgagcgtccgccggaacagaagtatgccgatctg
caggaattcctgaaggagttcaagctgcgcatgccgccgtggccgaaggtgcagccgcgc
gatttcaccaacctcctcaagaaaatccgcgagcggcccgacgccaccctgctggagtcc
gtactcctgcgcagccagagcctggcggtgtactcgccggacaaccacggccacttcggc
ctggcgctggaagcctacgcgcacttcacctcgccgatccggcgttatccggacctgatg
gtgcaccgtgcgatcaagcatgcgttgtccggcgcgagcgcggagaagttcatctacacg
ccggcgcagatggcagcgctgtcgctgcagtgctccgagcgctcgcgtcgtgccgacgag
gcccagcgcgaggtcgacgagcgttaccgcgcggcgtggatggagcagcacgtgggcggt
gagttctccggtgtgatcagcggcgtgaccagcttcggcctgttcatcgagctggacgat
tccaaggtcaacggcctggtccatgtcacccagctgccgaacgactattaccacttcgac
ccgatccgcaagaccctgaccggccagcgcggcggccgcgagttccgccttggcgaccga
gtcgacatcatcgtgatgaaggccagcgtcgaggaccgcaagatcgatttcaaactggtc
gaggagcgtggggtgaagtcattgccgccacgcggccagccggcaaagcgcaacaaacag
aaatactag
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