Marilutibacter alkalisoli: FKV23_16875
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Entry
FKV23_16875 CDS
T06167
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
lyj
Marilutibacter alkalisoli
Brite
KEGG Orthology (KO) [BR:
lyj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lyj03019
]
FKV23_16875 (hrpB)
Enzymes [BR:
lyj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
FKV23_16875 (hrpB)
Messenger RNA biogenesis [BR:
lyj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
FKV23_16875 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
CON_HrpB
HA2_N
Flavi_DEAD
HA2_C
Motif
Other DBs
NCBI-ProteinID:
QDH71581
UniProt:
A0A514BW19
LinkDB
All DBs
Position
complement(3818372..3820978)
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AA seq
868 aa
AA seq
DB search
MQVNHPDLPIDPLLPQIRDSLAVHPRLVLEAPPGAGKTTRVPPALLDAPWLQGRKIVMLE
PRRVAARAAAMFMARERGEAVGETVGYRIRFDNKVSAKTRIEVVTEGILTRMIQDDPMLE
GIGALLFDEFHERHMAADLGLALALDVQASLYPDPGSSPGPALRIVVMSATLDGARLAQF
LDAPRLASEGRSFPVAIEHVPARRDEKPEHQMRRAIEHALEAHPGDVLAFLPGRREISRV
EAVLSPLSPAEEGVEVLTLHGDLPVEQQTRVLQPATDGRRRVVLATNVAESSVTLPGVRV
VVDSGLAREPRYDPNSGFARLDVVNIAQASADQRAGRAGRVAEGWAYRLWPQSQRLEPQR
RPEIAQVELAGLALELAAWGNAELRFVDPPPPGALAAARELLQRLGALDAGPHPSPQARE
GISGITPLGRRMLALGTHPRLAAMLLASSSQSETALACDLAALIEARDPLLPRKGVQRSD
ALAERWQALAAFRTGRVPADASRASLAAIDQAAKQWRRRLRIDAPPPVDLPAHALGDVLL
HAWPDRIARQHPTDPYRYALANGRIARLFDDSMLYGEPWLVISELRDDAREARILRAAPL
DESRLRREFPQRFTREDRVVWDAEKRAIAAIRESRFDRIVLDSRPLAKPNEKEWSSKYAD
ALVDAVRQLGLDALPWTESLRQWRARVRCLRAWMPELAETLPDLSDATLLASLDDWLRPA
LAGRTRLDALDEQSFGEALKSSLDWATRQHIDTLAPLRIAVPSGLERRIDYAWDAAAGTP
VEPVLAVKLQELFGLADTPRIVGGRVPLTLHLLSPGGRPLQVTRDLRGFWDRTYPEVRKE
MKGRYPRHPWPDDPWSAMATHRAKPRGT
NT seq
2607 nt
NT seq
+upstream
nt +downstream
nt
atgcaggtgaaccatcccgacttgcccatcgaccccctgctgccgcagatccgcgacagc
cttgccgtgcatccgcggctggtactggaagcgccgccgggcgccggcaagaccacccgg
gtgccgccggcgctgctcgatgcgccgtggctgcagggtcggaagatcgtgatgctggag
ccacgccgggtcgcggcgcgggcggcggcgatgttcatggcgcgcgagcgcggcgaggcg
gtcggggaaaccgtcggctaccgcatacgcttcgataacaaggtgtctgcgaagacccgg
atcgaagtggtcaccgagggcatcctgacccggatgatccaggacgatccgatgctggaa
ggtatcggcgcactgttgttcgacgagttccacgaacggcacatggccgccgacctcggc
ctcgcgcttgccctcgacgtgcaggcgtcactttatccggaccccggatcaagtccgggg
ccggctctgcgcatcgtggtgatgtcggcgacgctggacggcgcgcggctggcgcagttc
ctcgatgcacctcggctggcaagcgaggggcgcagcttcccggtcgcgatcgaacacgtc
ccggcccgccgtgacgagaagcccgaacaccagatgcggcgcgcgatcgagcatgcgctg
gaagcacacccgggggacgtgctcgcgttcctgccgggacggcgcgagatctcgcgggtg
gaggcggtgctgagcccgctttcgcctgcggaagagggggtggaggtattgaccctccac
ggcgaccttcccgtcgaacagcagacccgggtgctgcagcctgcgaccgacggccgccgg
cgcgtcgtgctggcgaccaatgtcgccgaatccagcgtgaccctgccgggcgtgcgcgtg
gtggtcgattccggactcgcccgcgagccgcgctacgaccccaacagcggtttcgcgcgg
ctggacgtggtcaacattgcgcaggcctcggccgaccagcgtgccggtcgcgccggccgc
gtcgccgagggctgggcctaccggctgtggccgcagtcgcagcggctggagccacagcgg
cggccggagatcgcccaggtcgaactggccgggctggcgctggaactggcggcctggggc
aatgccgaactgcgtttcgtcgacccaccgccaccgggggcgctcgctgccgcgcgcgag
ctgctgcagcgcctcggtgcactggacgccggcccccacccttctccgcaagcgagggag
gggatttcaggaatcaccccgctcggccggcgcatgctcgcgctcggcacccatccacga
ctggcggcgatgctgctcgcatccagctcgcaaagcgagactgcactggcctgcgacctc
gccgcattgatcgaagcgcgcgatccgctgctgcctcgaaaaggcgtgcagcgcagcgat
gccctggccgaacgctggcaggcgctggcggcgttccgcactggccgcgtgcccgcagat
gcatcgcgcgcgtcgctggccgcgatcgaccaggccgcgaagcaatggcggcgacggttg
cgaatcgatgcgccgccgccggtcgatctgcccgcgcatgcgctcggcgacgtgttgctg
catgcctggccggaccggatcgcgcgccagcatcccaccgatccctatcgctatgcgctc
gccaacggccgcatcgcgcgactgttcgacgacagcatgctctacggcgagccgtggctg
gtgatcagcgaattgcgcgacgacgcccgcgaagcgcgcatcctgcgcgcggcccccctg
gatgaatcacgtttgcgacgtgagttcccgcagcgtttcacccgcgaggatcgcgtagtg
tgggatgcggagaaacgtgccatcgccgcgatccgcgaatcgcgtttcgaccgcatcgtg
ctcgacagccggccgctggcgaaaccgaatgagaaggaatggtcgtcgaagtacgccgac
gctctggtcgatgcggtgcgccaacttggcctcgatgcgctgccgtggaccgaatcgctg
cggcagtggcgtgcgcgggtgcgctgcctgcgcgcgtggatgcctgagctggccgagacc
ctgcccgatctctctgatgccacgctgctggcctcgctcgacgactggctgcggccggcg
ttggccggcaggacccggctcgacgcgctcgacgaacagagcttcggcgaagccctgaag
tcgtcgctcgactgggccacgcggcaacacatcgacacactggcgccgctgcgcatcgcg
gtgccgtccggcctagaacgccgcatcgactatgcctgggacgccgccgccggtacgccg
gtcgaaccggtactggcggtcaagctgcaggaactgttcggcctcgccgacaccccgcgc
atcgtcggcgggcgggtgccgctgaccctgcacctgctgtcgccgggcggtcgtccgtta
caggtgacccgcgatctgcgcgggttctgggaccgcacctacccggaggtgaggaaggag
atgaaggggcggtatccgcgccacccatggccggacgatccatggagtgccatggccacg
cacagggccaaaccacggggcacctga
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