Protaetiibacter larvae: FLP23_05210
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Entry
FLP23_05210 CDS
T06178
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
lyk
Protaetiibacter larvae
Brite
KEGG Orthology (KO) [BR:
lyk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lyk03019
]
FLP23_05210 (hrpA)
Enzymes [BR:
lyk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
FLP23_05210 (hrpA)
Messenger RNA biogenesis [BR:
lyk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
FLP23_05210 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
nSTAND3
T2SSE
NACHT
PhoH
ResIII
AAA_30
SLFN-g3_helicase
AAA_33
HA2_N
FtsK_SpoIIIE
TsaE
Motif
Other DBs
NCBI-ProteinID:
QEO09460
UniProt:
A0A5C1Y729
LinkDB
All DBs
Position
complement(1107174..1111076)
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AA seq
1300 aa
AA seq
DB search
MSEVAAPAYRIVYPPELPVSQAHDELARAIREHQVVIVAGATGSGKTTQLPKICLELGRE
RIGHTQPRRIAARSIAERIASELGVELGGVVGYQVRFDDRTRVDTAIKLMTDGVLLAELS
RDRELRAYDTIIIDEAHERSLTIDFLLGYLRQLLPRRPELKVIVTSATIDPESFARHFAA
ADGTPAPIVEVSGRTYPVEIRYRPLVSATQENDGDEDVDAPDAARSPETRKATREVAREA
EGRDVTEGIVDALVELGREEPGDVLVFLSGESEIRDAADVVRGRFGTDTEVVPLYGRLSA
AEQHRVFDTKRSLGIRRRVVLATNVAETSLTVPGIRYVVDAGTARISRYSPRAKVQRLPI
EAISQASANQRSGRAGRTSDGIAIRLYSEDDFARRPEFTDPEILRTGLAAVILQMLELRL
GDIRAFPFLTPPDSRGIADGLELLRELGAVGSPNPRESTHFRAESGENPGKARTFAEGEA
ITRVGRDLARLPVDPRFGRMLVEAKKRGVVREVAAIVAGLSIQDPRERPLERRPQADAAH
ARFRDPGSDFVSLLNLWNHLEERQKELSGNAFRRMCKTEYLNYLRVREWQDLYRQLVRAG
KSIGITPGAKSTDADAIHQSVLAGLLSRLGLRDAEKKDYLGSRGQRFVIFPGSGLAKKQP
NAVMAAELVETSRLFARTVAAIDPAWAEEIAGALAKRSHTEPHWSSAQGAALVWEKVTLY
GVPIVPRRRAQLARIDPEQARELFIRHALVEGEWPKDLERSALLGFDRANEKLRRQLAEV
EERTRRRDILTGDEAVFEFYDRRIPAEVTDTRRFASWWKKTKAVEPELLTMHREDLLEDG
AGDADGFPDEWLHGDTRFALRYRFEPGADDDGVTVVIPVAVLPRVSERGFDWLVPGLRED
LVTALIKALPKAIRRHVVPAGDWARRLLAELPVRSDAPVGEALADAIRAAAHIPVSASDI
EWERVPAHLRMRFAVVDTQGRQLAAGRDLATLQSRLAERARTDVAVVTAAATPGRELERA
GITGWDLDSLPERIEARQGGSTVVGYPALVDEGAGVALRVYATRAEADRAHPRGVRRLVA
LTLPSPLGYVQEQLTTAEKLVLATAPYPSTKALLDDVLLAVVDELAGDAAPRDPAGFDAL
REKVSAGLMDGLFRAAGLTVRVLTAAKEVDRAVSASSSLAFMAPLADARAQLAGLVHPGF
VRITGLAALARVPLYAAGIRHRVEKLADNPGRDRAWQNQVEEAVALYRAAGGELPLTAST
PARLVPVRWMLEELRLSLFAQQLGAAGPVSVQRIRKALEA
NT seq
3903 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaggtcgccgcccccgcctaccgcatcgtctacccgcccgagctgcccgtcagc
caggcgcacgacgagctcgcgcgcgccatccgcgagcaccaggtggtgatcgtggcaggt
gccaccggctccggcaagaccacccagctgcccaagatctgcctcgaactcgggcgggag
cgcatcgggcacactcagccccgccggatcgcggcccgctcgatcgccgagcgcatcgca
tccgagctgggcgtcgaattgggcggggtggtcggctaccaggtgcgcttcgacgaccgc
acgcgcgtcgacaccgccatcaagctcatgaccgacggcgtgctgctggccgagctctcc
cgcgaccgcgagctgcgcgcctacgacacgatcatcatcgacgaggcgcacgagcgctcc
ctcacgatcgacttcctgctcggctacctgcggcaactgctgccgcggcgccccgagctc
aaggtgatcgtcacctccgcgacgatcgacccggagagcttcgcccggcacttcgcggcg
gcggatggcacccccgcgccgatcgtcgaggtctccgggcgcacctaccccgtcgagatc
cggtaccgaccgctggtctccgcaactcaggagaacgacggcgacgaggacgtggatgcg
ccggatgcggcccgatctcctgagacacggaaggcgacgcgggaggtcgcgcgcgaggcg
gaggggcgcgacgtcactgagggcatcgtcgacgccctcgtcgaactcgggcgcgaggag
ccgggcgacgtgctggtgttcctctcgggcgagtccgagatccgggatgccgcggacgtc
gtgcgcggacgcttcggcaccgacaccgaggtcgtccccctgtacgggcggctctcggcg
gccgagcagcaccgggtgttcgacacgaagcgctccctgggcatccggcgccgcgtcgtg
ctcgccaccaatgtcgccgagacgagcctcacggtgcccggcatccgctacgtggtcgac
gccggcacggcgcgcatcagccgctactcgccgcgcgccaaagtgcagcggctgccgatc
gaggcgatcagccaagcatccgcgaaccagcgctcgggccgcgccggacgcacgagcgac
ggcatcgcgatccgcctgtactcggaggacgacttcgcgcgccgccccgagttcaccgac
cccgagatcctgcgcacgggcctcgccgcggtgatcctgcagatgctcgagttgcggctc
ggcgacatccgcgccttccccttcctcaccccgcccgactcgcgcgggatcgccgacggc
ctcgaactgctgcgcgaactcggcgccgtcggctcgccgaacccccgcgaaagtacgcac
tttcgcgcggaatcaggcgaaaatccgggaaaagcacgtactttcgcggagggggaggcg
atcacccgggtggggcgcgacctcgcgcgactgcccgtcgacccgcgcttcggacggatg
ctcgtggaggcgaagaagcgcggcgtggtgcgcgaggtggccgccatcgtggcggggctg
tcgatccaggacccgcgcgagcgcccgctggagagacgcccgcaggcggatgccgcccac
gcgcggttccgcgacccgggcagcgacttcgtgagcttgctgaacctttggaaccacctc
gaggagcgccagaaggagctctcgggcaatgccttccgacgtatgtgcaagacggaatac
ttgaactacctgcgggtgcgggaatggcaggacctgtaccggcagctcgtgcgggccggg
aagtcgatcgggatcaccccgggcgcgaagagcacggacgcggatgccatccaccagtcc
gtcctcgcaggcctgttgagccgactcggcctgcgggacgccgagaagaaggactacctc
gggtcacgggggcagcgtttcgtgatcttcccgggatccgggctcgccaagaagcagccg
aacgcggtgatggccgccgagctcgtcgagaccagccgactgttcgcccgcaccgtggcg
gccatcgaccccgcctgggcggaggagatcgcgggcgcactcgccaagcgcagccacacc
gaaccccactggtcgagcgcgcagggcgccgcgctcgtctgggagaaggtgaccctgtac
ggcgtgccgatcgtgccccggcgccgcgcacagctggcccgcatcgaccccgagcaggcc
cgcgagctgttcatccggcacgccctcgtggagggcgagtggccgaaggatctcgagcgc
tccgcgctgctgggcttcgaccgcgccaacgagaagctgcgccgccagctcgccgaggtg
gaggagcgcacccgccgtcgcgacatcctcaccggcgatgaggccgtgttcgagttctac
gaccggcggatcccggccgaggtcaccgacacccggcgcttcgcgagctggtggaagaag
acgaaggccgtcgagcccgagctgctcaccatgcaccgcgaggatctgctcgaggacggc
gcgggcgacgccgacggcttccccgacgaatggctgcacggcgacacccgtttcgcgctg
cgctaccgcttcgagccgggggccgacgacgacggcgtgaccgtggtgatccctgtcgcg
gtgctgccgcgggtgtccgagcgcggcttcgactggctcgtgccgggattgcgtgaggac
ctcgtgacggcgctcatcaaggcgctgccgaaggcgatccggcggcacgtggtgcccgcg
ggcgactgggcgaggcgactgctcgccgaactgccggtgcgctcggatgcgccggtcggt
gaggcgctcgccgacgcgatccgcgccgccgcccatattccggtgtcggcatccgacatc
gagtgggagcgcgtgcccgcgcacctgcggatgcggttcgcggtcgtcgacacccagggc
aggcagctcgccgccggccgcgacctcgccaccctgcagtcacggctcgccgagcgcgcc
cgcaccgatgtggcggtcgtcacggcggccgcgaccccggggcgcgagctcgaacgcgcc
ggcatcacgggctgggacctcgattccctgcccgagcggatcgaagcccgtcaggggggc
tcgacggtcgtcggctacccggccctcgtcgacgagggtgcgggagtcgccctccgcgtc
tacgcgacgcgcgccgaggccgaccgcgcccacccgcgcggcgtgcggcgactcgtggcg
ctcaccctgccgagcccgctcggctacgtgcaggagcagctcaccaccgccgagaagctc
gtgctcgcgaccgccccctacccctcgacgaaggcgctgctcgacgacgtgctgctcgcc
gtggtcgacgagctcgcgggcgacgccgccccgcgcgacccggccggcttcgacgccctg
cgcgagaaggtgtcggccggcctcatggacggcctcttccgtgcggccggcctcaccgtg
cgagtgctcaccgccgccaaggaggtcgaccgcgccgtctccgcatcctcgagcctcgcc
ttcatggcgccgctcgccgacgcgcgcgcccagctcgccggcctcgtgcatcccggtttc
gtgcgcatcaccggtctcgccgcgctcgcccgcgttccgctctacgccgccggcatccgg
catcgcgtcgagaagctcgccgacaaccccggccgcgaccgcgcctggcagaaccaggtg
gaggaggccgtggcgctgtaccgggcggccgggggcgagctgccgctcaccgcctcgacg
cccgcccggctcgtgccggtgcgctggatgctcgaggagctgcggctgtcgctcttcgcc
cagcagctgggggccgcgggcccggtgtcggtgcagcggatccgcaaggcgctcgaggct
tag
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