Lysinibacillus sp. OF-1: NV349_00390
Help
Entry
NV349_00390 CDS
T10748
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lyo Lysinibacillus sp. OF-1
Pathway
lyo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lyo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NV349_00390 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lyo03400
]
NV349_00390 (mfd)
Enzymes [BR:
lyo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NV349_00390 (mfd)
DNA repair and recombination proteins [BR:
lyo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NV349_00390 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
AAA_16
Cas3-like_C_2
RecG_dom3_C
AAA_22
MFD_D3
IstB_IS21
UB2H
ISP_coupler
Motif
Other DBs
NCBI-ProteinID:
WCH47909
LinkDB
All DBs
Position
79216..82722
Genome browser
AA seq
1168 aa
AA seq
DB search
MEVLRQLVSQDKHITSFLQEIQSGQTASQLITGLTGSARPVMVDALFEHVKKPIYIVSPN
LLQAQKMVDELAGLLGEEHVHYYPADEFIAADLSVASPELRAERIATLDCLARGEKAVYV
IPVAGLRKIMQPKEHWLQYFLQTAVGDEIEIDTWLQTLVEMGYVRNSMVTTPGEFALRGG
ILDIYPPYLEAPIRIELFDTEVDSIRTFSADDQRSIDKLQKIRILPASEVILTKLERQAL
AGRLEAALAASLKKVKKQETKELLYQYIQYDIELLQQGNLPDYVNKYGSLLYDKTAYLGD
YFAQDGIVLFDELGRIQEVMDAWEREEDEWFLSLIEEGKMVHDVKPAFTLKEIQAMLSQQ
KLSFSLFSRTFAGITFNKTTNFSCKPMQQFHGQMSLLQTEVERWLLGKFTVLIVARDKER
VKRVQHMLGEYDIHTAIGEPTEPGIYIVDGGLSSGFELPLQRLAIVTEDELFKQQAKKKA
RTQKMTNAERIKSYTEIKPGDYVVHVHHGIGKYIGVETLEVNGTHKDYLHIRYRADDKLY
VPVEQIDLIQKYVASEDREPKLHKLGGAEWKKAKAKVSSAVQDIADDLIKLYAKREAEKG
HAFTPDNDDQRNFESLFPYEETEDQLRSIVEVKRDMERERPMDRLVCGDVGYGKTEVAIR
AAFKAIQDGKQVAFLVPTTILAQQHYETIRERFQDFAINVGLLSRFRTKKEQSATLKGLK
EGRVDIVIGTHRILSKDLIFQDLGLLIVDEEQRFGVTHKEKIKQLKTNVDVLTLTATPIP
RTLHMSMVGVRDLSVIETPPANRFPVQTYVMEHSGALVREAIEREMARGGQVFYLYNRVE
DMARKVEEIQVLVPEARIGFAHGKMTESELESVILAFLEGDYDVLVTTTIIETGVDIPNV
NTLIVHDADRMGLAQLYQLRGRVGRSNRVAYAYFMYQRDKVLTDVAEQRLQAIKEFTELG
SGFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDLYSQMLQDAIAERQTGVKKEEKPDIEI
LLSVDAYIPDAYIPDGYQKIQMYKRIKAMDQVEEYEEIMEELEDRFGDLPIETERLLRIA
RMKVWGLGAGVVSVKEKQKIITILLSEQGTANVDGSKIIEASMKFERAVGFGMDGMQLKL
TIDERKSGKYQPFDILEELMQIIDKAKK
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
gtggaggttttacgacagcttgtgtcgcaggataaacatattacatcatttttacaggag
attcagagcggtcaaactgcatcacagcttattactggtttaacaggaagcgcacgcccc
gtaatggtcgatgcgttatttgagcatgtgaagaagccaatctacattgtttctcctaat
ctactgcaggcacaaaagatggttgatgagcttgctggattattaggtgaagagcatgtt
cattattatccagcggatgaattcattgcagcagacctttctgttgcttcaccagaacta
cgtgcggagcgaattgcaacactcgattgcttagctagaggtgagaaggctgtctacgtc
ataccagtggcaggtttacggaaaataatgcagcctaaggaacattggctacaatatttt
ttacaaacagctgtaggcgatgagattgaaatagatacttggttacaaacattagttgaa
atgggctatgtgcgtaattcaatggtaacgacacctggagaatttgcgttgcgcggaggc
atactagatatttatccaccttatttggaagcacctattcgaattgaattatttgatact
gaggttgattccatacgaacattttcagcagatgatcaacgttcgattgataaattacaa
aagattcgtattcttcctgcttcagaggtcattctaactaagttagaaaggcaggcatta
gcaggccgtttagaagcggcattggctgcaagcctaaagaaggtaaaaaagcaggagaca
aaagaacttctgtatcaatatattcaatatgatattgaattgttacagcaagggaattta
cccgactacgtaaataaatacggctcattattatacgataaaacagcttatttaggagat
tattttgcacaagatggtattgtgctctttgacgagcttggacgcattcaggaagtgatg
gatgcatgggaacgtgaagaggatgaatggtttttatctttaattgaagaaggaaaaatg
gttcatgatgtcaaacctgcctttacattaaaagaaatacaagcaatgttgtcacaacag
aagctatcattttcattattttcaagaacatttgctggaataacgtttaataagacaact
aatttctcttgtaagccaatgcagcaatttcacggacaaatgtcattgcttcaaactgaa
gtcgaacgctggttacttggtaaatttaccgtactgattgttgcaagagataaagaacgt
gttaaacgagttcagcacatgcttggagaatacgatattcatacggctattggtgaacca
acagaacctggtatttatatagtagatggtggcttgtcgagtggctttgaattgccactg
caacgtctagcaattgtgacagaagacgagctttttaaacagcaggcaaagaaaaaagca
cgtacacaaaaaatgactaatgctgaacgtattaaaagctatacggaaattaaaccaggt
gattatgttgtacatgttcatcatgggattggtaaatatattggtgtagaaacattagag
gtcaatggtacacataaggattatttgcatattcgctatcgtgcagacgataaactatac
gtacctgtagaacaaatagacttaatccaaaaatatgtggcgtcagaggatcgtgaaccg
aagctacataaattaggtggcgctgaatggaaaaaggctaaagcgaaggtatcttctgct
gtacaggatattgccgacgatttaattaagctatatgcgaagcgtgaagctgagaagggg
catgcttttacacctgataatgatgaccagcgtaatttcgagtcattgttcccttatgag
gaaacagaggatcagctacgttctattgtagaagtgaaacgagatatggagcgagaacgc
cctatggaccgtttagtgtgcggtgatgtaggctatggtaaaaccgaggtagccattcgt
gcagcatttaaagctattcaagatggtaaacaggttgcattcctcgttcctacaacgatt
ttagcccagcagcattatgaaaccatccgtgagcgctttcaggattttgccattaatgtt
ggcctgttatctcgtttccgaacgaaaaaggagcagtctgccacattaaaaggcttaaaa
gaggggcgcgttgatatagttataggaacacatcgaattttatctaaagatttaattttc
caagatcttggtttgttaattgttgacgaagaacaacgctttggtgtgacacataaggaa
aaaattaaacagctaaagacaaatgttgatgttttaactttaacggcaactccaatcccg
aggacacttcacatgtcaatggtaggagtccgagatttatctgttattgaaacgcctcct
gctaaccgattcccggttcaaacatatgtgatggagcacagtggtgcattagtgcgagaa
gctatcgagcgggaaatggcgcgtggcggacaagtgttttatttatataaccgagtagaa
gatatggctcggaaggttgaggagattcaagtgcttgtccctgaagcacgtataggcttt
gcgcatggaaaaatgacagagtcagagctggaatctgtgattttagcctttttagagggt
gactatgatgtgcttgttacaacaaccattattgagacaggcgtcgatataccaaatgtg
aatacattaattgttcatgatgctgatcgcatgggcttagcgcagctctatcaattacgt
ggacgtgttggtcgctctaacagggtagcctatgcgtactttatgtaccagcgtgacaaa
gtattgacagatgtagcggaacaacgattgcaggcaattaaagaatttactgagctaggc
tccggctttaaaattgctatgcgtgatttatctattcggggagcaggtaacttacttggt
gcgcagcagcatggctttatcgattcagtcggctttgatttatactcacaaatgcttcag
gatgccattgctgaacgtcaaacaggcgtgaaaaaagaagaaaagccagatatagaaata
ttgctaagtgttgatgcttatatccccgatgcctatattccagatgggtatcaaaaaatc
caaatgtataaacgtattaaggcaatggatcaggtggaggagtacgaagaaatcatggag
gaattggaggatcgatttggcgatcttccaatagaaacagagcgtttactacgaatagca
agaatgaaggtttggggcttaggtgctggagtagtatctgtaaaggaaaagcaaaaaatt
attactatcctattatccgaacaggggacagccaatgtcgatggcagtaagattattgaa
gcgtcaatgaagtttgagcgtgctgttggctttggtatggatggcatgcagttgaaatta
acaatcgatgagcgtaagagcggaaaatatcaaccctttgatattttggaagagctaatg
caaattatcgataaggcaaaaaaatag
DBGET
integrated database retrieval system
