Lysinibacillus sp. OF-1: NV349_18645
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Entry
NV349_18645 CDS
T10748
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
lyo Lysinibacillus sp. OF-1
Pathway
lyo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lyo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NV349_18645 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lyo03019
]
NV349_18645 (rnr)
03016 Transfer RNA biogenesis [BR:
lyo03016
]
NV349_18645 (rnr)
Enzymes [BR:
lyo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
NV349_18645 (rnr)
Messenger RNA biogenesis [BR:
lyo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NV349_18645 (rnr)
Transfer RNA biogenesis [BR:
lyo03016
]
Prokaryotic type
tRNA degradation factors
NV349_18645 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
S1_RRP5
CSD
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
WCH47036
LinkDB
All DBs
Position
complement(3811400..3813868)
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AA seq
822 aa
AA seq
DB search
MKDQKDTLQSRLLDFFNKDDYKPLTVGEIEDEFGFEDAEEFKELVKTLVRMEGQGLVVRS
RSNRYGLPERMNLLRGKFIGHAKGFGFVTPDVEGMDDVFIPPHEINGAINGDIVLIRVLK
ESFGDRREGTVTKVVERGQTSFVGTFQANRGFGFVVLDDKKLPMDIFIAKGDTLGAVDGH
KVVVEVATWPEDLKSATGYITKILGHKNDPGVDILSILYKHDIPPEFPDEVIAAAQRVPD
EITEADLVGRRDLRHETIVTIDGADAKDLDDAVTVTKNVDGTYKLGVHIADVSYYVTQGS
VIDIEAYDRATSVYLTDRVIPMIPHRLSNGICSLNPQVDRLTLSCEMIIDGNGNVISHEI
FQSVIKTTERMTYKDVYMILEEQDEALIERYEPLVPMFKNMAELSGILRRKRETRGAIDF
DFKESKVLVNEEGWPVDIELRERTVAEKLIEDFMLAANETVAEHFHWMNVPFLYRIHEDP
KPEKLQRFFEFVTNFGILIKGTGNTVHPKALQDVLKAIDGMPEEPVISTMLLRSMQQAKY
YPESLGHFGLSTDFYTHFTSPIRRYPDLIVHRLIRTYIINKDTSRETIAQWSMAMDEIAD
HTSERERRAVDAERDTDALKKAQYMSDKIGEEFEGIVSSITNFGIFVELPNTIEGLVHIS
NMTDDYYRFDDRQMIMIGERTNRQFRIGDEVTVRVANVIIEESSIDFEIVGMVTSYGRTR
KAAPTVIHARKNYSDNKGGRSQRSTRSDEEKGGRGGNRRGGRQEDDRGSRSAKQGERRES
DRDPRGRRKEDSSPGPKKRVKQKQKFYEGIAKKNKKKKSKRK
NT seq
2469 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaccaaaaagatacactacaaagtcgtttactcgattttttcaacaaagatgat
tataaaccattaactgtcggtgaaatcgaggatgaattcggttttgaggatgctgaggag
ttcaaggagcttgtcaaaacccttgtccgtatggaagggcaaggcttagttgtgcgttct
cgctccaatcgttatggtctaccagagcgtatgaatttgctaagaggtaaatttatcgga
catgcgaagggcttcggttttgtgacacctgatgtcgagggcatggatgatgtattcatt
ccaccgcatgaaattaatggtgcgattaatggagacatcgttttaattcgtgtcttaaaa
gaatcatttggggaccgacgagaagggactgtcacaaaggtcgtcgagcgtggtcaaaca
agctttgtcggcacattccaggctaatcgaggctttggctttgttgtcttagacgataaa
aagctaccgatggatatctttatcgcaaagggagacacattaggagctgttgacggtcat
aaggttgttgttgaggttgcgacatggccagaggatttaaaatccgcaacaggctatatt
accaaaattttagggcataaaaatgatccaggtgtggatattttatcaatcttatataag
cacgacattccacctgaattcccagacgaagtcatcgcagctgctcaacgcgtcccagat
gaaattacagaggcagatttagtaggtcgtcgtgatttgcgacatgaaacgatcgtgaca
attgatggtgcagacgcaaaagacttggatgatgcggtaaccgtaacgaaaaatgtagat
ggtacttacaagcttggcgtacatattgcagacgttagttactatgttacgcaaggctca
gtcattgacatcgaagcttatgaccgtgcaacaagtgtttatttaacagaccgtgtaatc
ccaatgattccacatcgtctatcaaacggtatttgttcattaaatccacaagttgaccgt
ctaacattatcctgtgaaatgattattgatgggaatggtaatgtcatttcacacgaaatt
ttccaaagtgtcattaaaacgacagagcgtatgacatataaggacgtttacatgatttta
gaggagcaggatgaggcactaatcgaacgctacgagccacttgtgccaatgtttaaaaat
atggctgagctatctggtatattacgtcgtaaacgtgaaacacgaggggcgattgacttt
gactttaaagaatccaaagtccttgtcaatgaagaaggctggccagttgatattgaatta
cgtgaacgtacagtagcggagaagctaattgaggatttcatgcttgctgccaatgaaaca
gttgcagagcacttccactggatgaatgtaccgttcctataccgtattcacgaagatcca
aagcctgaaaagctccaacgcttctttgaatttgttacgaacttcggtattttaattaaa
ggtactggtaatacagtgcatccgaaggcactgcaagatgttttaaaagccattgatggt
atgccagaggagcccgttatttcaacaatgctactacgctcgatgcaacaggcaaaatat
tatcctgaaagccttggtcactttggcttatcaacggatttctatacacacttcacatca
ccaattcgtcgttatccagacttaatcgtacatcgtttaattcgtacgtatataattaat
aaggatacttctagagaaacgattgcacagtggagtatggcaatggatgaaattgctgac
catacttctgagcgtgaacgtcgtgctgttgatgcagaacgtgatacggacgctctgaaa
aaagcacagtacatgtctgataaaattggcgaggaattcgaagggatcgtttcatccatt
acaaacttcggtattttcgtggagctgccaaacacaatcgaaggacttgttcacatcagt
aatatgacagatgattactaccgcttcgatgatcgtcaaatgattatgattggtgaacga
acaaatcgtcaattccgtattggtgatgaagtgacagtccgtgttgccaatgtcattatt
gaggagtcatccattgactttgaaatcgttggaatggtaacttcatatggacgaacacgt
aaagcagctcctactgtcatccatgcacgtaaaaattatagtgataacaagggtggacgc
agtcaacgaagcacacgcagcgacgaagaaaaaggcggacgcggtggcaaccgtagaggc
ggtcgccaagaggatgaccgtggaagtcgtagcgccaagcaaggtgaacgtcgtgaaagc
gatcgtgacccgcgtggtcgccgcaaagaagactcaagcccaggtcctaaaaaacgcgtg
aaacaaaagcaaaagttctatgagggcattgcaaagaaaaacaaaaagaaaaaatcaaaa
cgtaaataa
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