Lysinibacillus sp. OF-1: NV349_20790
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Entry
NV349_20790 CDS
T10748
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lyo Lysinibacillus sp. OF-1
Pathway
lyo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lyo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NV349_20790
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lyo03019
]
NV349_20790
03009 Ribosome biogenesis [BR:
lyo03009
]
NV349_20790
Enzymes [BR:
lyo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NV349_20790
Messenger RNA biogenesis [BR:
lyo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NV349_20790
Ribosome biogenesis [BR:
lyo03009
]
Prokaryotic type
rRNA helicases
NV349_20790
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Helicase_RecD
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
WCH47410
LinkDB
All DBs
Position
complement(4243016..4244545)
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AA seq
509 aa
AA seq
DB search
MTNFSELNISESTLRSVKRMGFEEATPIQEGTIRFAIEGRDVLGQAQTGTGKTAAFGIPL
IEKIDPKNPNIQALVIAPTRELAIQVSEELYKIGYDKRVKLLSVYGGQEIGRQIRALKNR
PQIIVGTPGRIIDHINRRTLKLEDVQTLVLDEADEMLNMGFIDDINSILENVPSERQTLL
FSATMPPAIRKIAETFMRDPEIVKIKAKELTVDNIDQYFVKSAEREKFDVLSRLLNVHQP
ELAIIFGRTKRRVDELAQALSIRGYLAEGIHGDLSQAKRISVLRQFKENKIDILVATDVA
ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKSGLAITFVTPREMGYLRIVEETTK
KRMTPLRPPTTDEALEGQQRLAVETLENLIANNNLGDYRTLAAEVLDNHEAIDVVAAALR
SLTREPDDTPVTITEERPLPMRRERSSSNRSGGDRGRGNRSFGGGRRDGARSGERRNSGS
SSRREGGRREGGRREGGQGRSRSPRRHEG
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
ttgacaaatttttcagaattaaatattagcgaatctacattacgctcagtaaagcgtatg
ggatttgaagaagcaacaccaatccaagaaggtactattcgttttgcgattgaaggccgt
gatgtattaggtcaagcacaaacaggtactggtaaaactgccgctttcgggattccacta
attgagaaaattgatccaaaaaaccctaatattcaggcgttagttattgctccaactcgt
gagttagcgattcaagtttcagaagagctatataaaattggctatgacaagcgcgtaaaa
ttattatcagtatacggaggtcaagaaattggccgtcaaattcgtgcactgaaaaataga
cctcaaatcattgttggtacaccaggacgtattattgatcatattaatcgtcgtacgtta
aaattagaagatgttcaaacattagtattggatgaagcagatgaaatgttaaacatgggc
tttatcgatgatattaattcaatcttagaaaacgtgccttctgaacgtcaaacattactg
ttctcagcaacaatgccaccagcaatccgtaaaattgcagaaacatttatgcgtgatcca
gaaattgtgaaaattaaagcaaaagaattaacagttgataatatcgatcaatattttgtt
aagtctgctgaacgtgaaaaatttgatgttttatctcgtttattaaacgttcaccaacca
gagcttgctattatttttggtcgtacaaaacgtcgtgtagatgagcttgcacaggcccta
tctattcgtggctatttagctgagggtattcatggtgatttaagccaggcgaagcgtatc
tccgtattacgccagtttaaagaaaataaaatcgatatccttgttgcgacggacgttgcc
gctcgtggacttgatatttctggtgtaacacacgtttataactttgatattcctcaagat
cctgaatcttatgttcaccgtattggacgtacaggtcgtgcgggtaaatcaggtcttgcc
ataacatttgtaacacctcgtgaaatgggttacttacgtattgtggaagaaacaacgaaa
aaacgtatgacacctcttcgcccaccaacaactgatgaagcattagagggtcaacaacgt
ttagctgtggaaacactggaaaatcttattgctaataacaatttaggtgattaccgcaca
cttgcagcggaagtactagataatcatgaagcaattgacgttgttgcagctgctctacgt
tcattaacgagagagccagacgatacaccagtaacaatcacagaagagcgtccattacca
atgcgtcgtgagcgttctagcagtaaccgtagtggcggtgatcgtggccgtggtaaccgt
agctttggtggcggacgtcgtgacggcgctcgcagtggagaacgtcgcaatagcggtagc
agtagccgtcgagaaggcggacgccgtgagggaggtcgtagagaaggtggacaaggtcgt
tctcgctctccacgacgtcacgaaggttaa
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