Lysinibacillus sp. PLM2: MTP04_00620
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Entry
MTP04_00620 CDS
T09546
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lyp
Lysinibacillus sp. PLM2
Pathway
lyp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lyp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MTP04_00620 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lyp03400
]
MTP04_00620 (mfd)
Enzymes [BR:
lyp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MTP04_00620 (mfd)
DNA repair and recombination proteins [BR:
lyp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MTP04_00620 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
RecG_dom3_C
IstB_IS21
MFD_D3
UB2H
UBA
Motif
Other DBs
NCBI-ProteinID:
BDH59932
LinkDB
All DBs
Position
74883..78404
Genome browser
AA seq
1173 aa
AA seq
DB search
MDVLFQLFSQDKHINGLIQQINDKAYDSQLITGLTGTARPVFIQTLFKELKKPIYILSPN
LLQAQKLVEDLTSLVGEELVHYYPAEEFIAADSTISSPELRAERIATLGHMVENHVGIYV
IPIAGMRKMMTPKEQWKNSFLETAVGEEIEIEEWLSKLVSMGYTRNQMVTTPGEFALRGG
ILDVYPPYAASPIRIELFDTEVDSIREFSADDQRSIQKLNTVQILPATVLLLNSNQRIAL
AERLEKALASSLKKIKKQEIKETLYQNIHYDMELLRQDSIPNHITKYGSLLYENPTFLGD
YFSDNGIVLFDELGRIQEVMDAWEKEEEGWFIELLEDGKIVHDVKPSFSFKEIIAMIHHQ
KIYFALFTRTFTGIKFSKTTNFSCKPMQQFHGQISLLQNEIERWRSERFTVLFVGDGEER
LKKIQRTLEDYNIDSVIGTPKEEGIYLIDGSLSSGFELPLQRLAIVTDDELFKQQTKRKK
SRPQKMSNAERIKSYTEIKAGDYVVHVHHGIGKYIGIETLEVNGTHKDYLHIRYRADDKL
YVPVDQIDLIQKYVASEGKEPKLHKLGGAEWKKTKAKVSSAVKDIADDLIKLYAKREAEK
GYAFSPDTDEQRSFEESFQYEETEDQLRTIIEVKRDMERERPMDRLVCGDVGYGKTEVAI
RAAFKAIMDGKQVAFLVPTTILAQQHYESIQERFEEYAINVGLLSRFRTKKQQAETLKGL
KEGTVDIVIGTHRVLSKDVVFHDLGLLIVDEEQRFGVTHKEKIKQLKTNVDVLTLTATPI
PRTLHMSMVGVRDLSVIETPPQNRFPVQTYVMEFSGALVREAIEREMARGGQTFYLYNRV
EDMSRKVEEIQMLVPEARVGYAHGKMTESQLESIILNFLDGEYDVLVTTTIIETGVDMPN
VNTLIVHDADRMGLSQLYQLRGRVGRSNRIAYAYFMYQRDKVLTDVAEQRLQAIKEFTEL
GSGFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDLYSQMLEEAIQERRGEKQEEKAEVEI
ILHTDAYIPDTYIPDGYQKIQMYKRIKSMDRIDDYSEIMDELLDRFGNLPIETEKLLRIA
RMKVWAIEAGVTAIKEKQNIISIYLSEEGTAKVDGSKIVSDSMEFNRAVGFTMDGQKLIV
SIDEKKCGKHVPFDVLEKMVETIAKSKKELVES
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atggacgttttatttcaactattctcacaagataaacatataaatggactgatccagcaa
attaacgataaagcatatgactctcaattaattacaggtctcactggaactgcgaggcca
gtatttattcagactctttttaaagagcttaaaaaaccaatatatatactctctcctaat
cttctccaagctcaaaaactagttgaggatttaacttcactagtaggcgaagaattagta
cattattacccagcggaagaatttatagcagcagattcaacgatttcctcccctgaatta
cgcgcagagcgtattgcaactttaggacatatggtagaaaatcatgtcggcatctatgtt
atccctattgctggtatgagaaaaatgatgacaccaaaagagcaatggaaaaatagtttt
cttgaaacagctgttggtgaagaaatcgaaattgaagaatggctatcaaagttagtttca
atgggctatacaagaaatcaaatggttacaacaccaggtgagtttgcattacgtggggga
attttagatgtatatccgccctatgcagcctcgcctattcgtattgagctctttgatacg
gaagtagactctatccgagagttttcagctgatgaccaacgctctattcaaaagttaaac
accgttcaaatattgccggccacagttttactgctaaattcgaatcaacgtattgctcta
gctgaaagattggaaaaggcactggcaagtagtttgaaaaaaattaaaaagcaagaaata
aaagaaacgctttatcaaaatattcattacgatatggaactacttcgtcaagatagtatt
ccaaatcatataacgaagtatggttcactcctttacgagaatccgacttttttaggtgat
tatttttctgataatggtatcgttctgtttgatgaacttggacgaatccaagaggtaatg
gatgcttgggaaaaagaagaggaaggatggtttattgagctattagaggatgggaaaatt
gttcatgatgtgaagccttctttctcattcaaagaaatcattgcgatgattcatcatcag
aaaatttactttgctctttttacaagaacttttacaggcattaaattttcaaagacaacc
aacttctcttgtaagccaatgcagcaattccacgggcaaatttctcttttacaaaatgaa
atcgaacgttggaggtcggaaaggtttacagttctttttgtcggtgatggtgaagaaagg
ttaaagaaaatacaaagaacattagaagattacaatattgatagtgtgatagggactcca
aaggaagaaggcatttatttaatagatggttcactatcttctgggttcgaactacctctt
cagcgtcttgcgattgtgacagatgatgaactatttaagcaacagacaaaaaggaaaaaa
tctcgtccacaaaaaatgtccaatgctgaacgcattaaaagttacacagaaattaaagct
ggagattatgtcgtacatgttcatcacggaatcgggaaatatattggtattgaaacatta
gaagtaaatggaacacataaagattatttgcatatccgttatcgtgctgacgataagctc
tatgtacctgtagatcagatagacttaatccaaaagtatgttgcttcagaaggaaaggaa
ccgaagctacataaattaggcggggcggaatggaagaaaacgaaagcgaaagtttcttca
gctgttaaggatattgctgatgacttaatcaagctttatgcaaaaagagaagctgaaaag
ggatatgcattttctccagatactgatgagcaacgttcctttgaggaatccttccagtac
gaagaaacggaagatcaattacgtacaatcattgaagttaaacgagatatggaaagagaa
cgtccaatggatcgattggtttgtggggatgttggatatggaaaaaccgaagttgctatc
cgtgcagcttttaaagcaattatggatggaaagcaggttgcttttcttgtcccaacaaca
atattagctcagcaacattacgagtctattcaggagcgttttgaggagtatgccataaat
gtaggtcttcttagtcgttttagaacaaaaaaacaacaagctgaaacattaaaaggctta
aaagaaggaactgtagatatagtcattggaacacaccgtgttttatcaaaggatgttgtg
ttccacgatttaggattattgattgtcgatgaagaacagcgatttggtgtaacccataaa
gaaaaaatcaaacaattgaaaacgaatgtggatgtattaaccctgacggcaacaccaata
ccaagaacattgcatatgtcgatggtaggtgttagagatttgtcagtaatcgaaacacca
ccgcaaaatagattcccagttcaaacttatgtaatggaatttagtggagcattagttcga
gaagcaatcgaacgcgaaatggctagaggtggacagacattctatttatacaatcgagtc
gaggacatgtcccgtaaggtagaagaaattcaaatgttggtccctgaagcgagagtagga
tatgcccatgggaagatgacagaatctcaactggaatcgatcatcttgaattttttggat
ggggaatatgatgttctggtgacaacgacgattattgaaactggtgtcgatatgccaaat
gtaaatacgttaatcgttcatgatgcagatcggatgggtctctcacagctttaccaattg
cgcggccgtgtaggtcgatctaatcgtattgcctatgcctatttcatgtatcaacgagat
aaggttttaacggatgtagcagaacaacgattacaagcaattaaagaattcactgagcta
ggctctggttttaaaatcgcaatgcgagatttatcaattcgtggtgcagggaatttattg
ggagctcagcaacacggctttatagactctgtaggcttcgatttatactctcaaatgcta
gaagaggctatccaagaacgacgtggtgaaaagcaagaggaaaaagcggaagttgaaatt
attcttcatacggatgcatatattcctgatacttatattccagatggatatcaaaaaata
cagatgtataaacgaatcaaatcaatggatcggattgatgactattctgaaataatggat
gagctgctagaccgatttggtaatctaccgatagaaacagaaaagctattacgaattgca
cgaatgaaagtttgggcaatagaagctggtgttacagcaattaaagaaaagcaaaatata
atttctatctatttatcagaagagggaacggcaaaagtggatggtagtaaaattgtatct
gactcaatggaatttaatcgtgctgtcggttttacaatggatggtcaaaaattaatcgta
tctatagacgaaaaaaaatgtggaaaacatgtcccatttgatgtccttgaaaaaatggtt
gaaacaattgcaaaatctaaaaaagaattagtggaaagctaa
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