Lysinibacillus sp. PLM2: MTP04_31410
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Entry
MTP04_31410 CDS
T09546
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
lyp
Lysinibacillus sp. PLM2
Pathway
lyp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lyp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MTP04_31410 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lyp03019
]
MTP04_31410 (recQ)
03400 DNA repair and recombination proteins [BR:
lyp03400
]
MTP04_31410 (recQ)
Enzymes [BR:
lyp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MTP04_31410 (recQ)
Messenger RNA biogenesis [BR:
lyp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MTP04_31410 (recQ)
DNA repair and recombination proteins [BR:
lyp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
MTP04_31410 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
Helicase_C
DEAD
HTH_40
HRDC
RecQ_Zn_bind
Utp25_C
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
BDH63011
LinkDB
All DBs
Position
3186867..3189005
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AA seq
712 aa
AA seq
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MLNEARNILKQYFGYPNFRDGQSDIIQNILNQKNTLGILPTGGGKSICFQIPALVFQGTT
IVISPLISLMKDQVDALLSSDIPATFINSSLNQREINDRLTQIRQGEYKLVYVAPERFDS
DYFIDVLNSIHIPLIAFDEAHCISQWGHDFRPSYRSIVSTLNKLNQNPIIVALTATATPN
VADDIRSLLHIHSDDSFKTGFARENLSFHVIKGSNKRDFIVNYLRNHRNESGIIYTSSRK
ETDGLYNYLKMQGYSVSKYHAGLSEEERKQAQEQFVYDETQIMIATNAFGMGIDKHNVRF
IIHYNLPKNLEAYYQEAGRAGRDGEESACYLLFSKQDIQLQKFLIEQSTFDMEKRDQEYH
KLNQMVLYCHTEECLQSYIIRYFDQNETEMKCEKCSNCKDTREKVDITLEAQMIFSCCKR
MEERFGVTLIAQVLKGSAQKRIRELGFNQLTTYGLLRSQTEKEITDTINYLLTEDYLFLT
DGKYPVVRLTEKCIPVLKGEQRVWMKKDVTPIIETTDSNESEELFEILRALRKQIATNEN
VPPFVIFADTTLKEMCRYFPIDEESMLRIKGVGQNKFAKYGEAFIEKIKEFVSANKIEAL
EMPPSIDSSTVDKPNDKQSHIISFEMYTKGMSIDEIAKERKSSKITVQNHIIRSAEEGHE
VAWAEIFDEETELRVLNAIQEIDSAKLKPIWEALNGEVDYFTIRAVICKNQT
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
gtgttaaacgaagcaagaaacatattaaaacaatattttggatatcccaattttagagac
ggacaatcagacattatccaaaacattttaaatcaaaaaaacacacttggaattttacct
acaggtggtggaaaatccatctgctttcaaatacctgcacttgtgtttcaaggaacaaca
attgtgatttctccacttatttctctcatgaaggatcaggttgatgctcttttatcctct
gatattccagctacttttataaatagttcacttaatcaaagagaaataaatgatcgattg
acgcaaattagacaaggagaatataagcttgtttatgttgcacctgaacgattcgattct
gattattttatagacgtcttgaattctatccatattccattaatcgcttttgatgaagca
cattgtattagccaatggggacatgatttcagaccaagctatcggtctatcgtttctaca
ttaaataaattaaaccaaaatcctattattgtagctttgacggcaactgccacaccaaat
gtagctgatgatattcggtcattattacatatacattccgacgattcttttaaaactggc
tttgcccgtgaaaatttatcgttccatgtgattaaagggtctaacaaaagagactttatc
gttaattatttaagaaatcatagaaatgagtcgggtattatttatacttcaagcagaaaa
gaaacagatggtctctacaactatctcaaaatgcaaggatattccgtttcaaaataccat
gcaggtctttctgaagaagagcgtaagcaagcacaggaacaatttgtatatgatgaaacc
caaatcatgattgcgaccaatgcctttggaatgggtatcgataaacacaatgtaagattt
attatccattataatttgccaaaaaatcttgaagcctattatcaagaggcaggtcgcgca
ggtcgtgacggtgaagaaagtgcatgctatcttttgttttccaaacaagatatccagcta
caaaaattccttattgaacagtccacttttgatatggaaaaacgtgatcaggaatatcac
aagctcaatcaaatggttctctattgccatacagaagagtgtcttcaatcttatatcatt
cgttatttcgatcaaaacgaaaccgaaatgaaatgtgaaaaatgtagcaactgtaaagat
acacgtgaaaaggtagatatcactcttgaagcccaaatgattttctcttgctgtaaacga
atggaagagcgctttggtgtgacattgattgcgcaagtattgaaaggttccgctcaaaaa
agaatccgcgaactaggttttaatcaattaactacctatggattactgcgttcacaaaca
gaaaaagaaattactgatacgattaattacttattaactgaagattacttatttttaacg
gatggaaaatatcctgttgttaggcttactgagaaatgcatacctgttttaaagggtgaa
caaagggtttggatgaaaaaggatgtcactcctatcattgaaactactgatagcaatgaa
agtgaagagttattcgaaatcttacgagctttaagaaagcaaatagctacaaatgaaaat
gtcccaccattcgttatctttgcagatacaacattaaaggaaatgtgtcgctacttccca
attgatgaagaatcaatgctgagaataaaaggcgtgggtcaaaataaatttgccaagtac
ggagaagcatttatagaaaagattaaagagtttgtttcggctaacaaaatagaagcttta
gaaatgccaccatctatagatagctcgacagttgataaaccaaatgataaacaaagtcac
attatttcatttgaaatgtatacaaaaggaatgagcatcgatgaaattgctaaagaacgg
aaatcttctaaaataactgtccaaaatcatattatccgaagtgctgaagaaggtcatgaa
gttgcatgggctgaaatatttgatgaggaaactgaactaagagttttaaatgccattcaa
gaaatagacagcgctaagcttaaacccatttgggaagcattaaatggtgaagttgattat
tttactattcgagcagtaatctgtaaaaatcaaacttaa
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