Lysinibacillus sp. PLM2: MTP04_35410
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Entry
MTP04_35410 CDS
T09546
Symbol
cshA
Name
(GenBank) ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lyp
Lysinibacillus sp. PLM2
Pathway
lyp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lyp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MTP04_35410 (cshA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lyp03019
]
MTP04_35410 (cshA)
03009 Ribosome biogenesis [BR:
lyp03009
]
MTP04_35410 (cshA)
Enzymes [BR:
lyp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MTP04_35410 (cshA)
Messenger RNA biogenesis [BR:
lyp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MTP04_35410 (cshA)
Ribosome biogenesis [BR:
lyp03009
]
Prokaryotic type
rRNA helicases
MTP04_35410 (cshA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Helicase_RecD
AAA_19
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
BDH63411
LinkDB
All DBs
Position
complement(3624035..3625516)
Genome browser
AA seq
493 aa
AA seq
DB search
MTNFSELNISESTLRSLQRMGFEEATPIQEGTVKFALEGRDIIGQAQTGTGKTAAFGIPI
IEKIDPKNTSIQALIIAPTRELAIQVSEEIYKIGYDKRVKILSVYGGQDIGRQIRALKNR
PQIIVGTPGRIIDHINRHTLKLENVQTLVLDEADEMLNMGFIDDINAILENVPEERQTLL
FSATMPPAIRKIATNFMKNPEEVKIKSKEMTVENIDQYFVKSQEREKFEILSRLLNVHQP
ELAIVFGRTKRRVDELAQALSIRGYLAEGIHGDLSQAKRLSVLRQFKENKIDILVATDVA
ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKSGLAVTFVTPREMGYLRIVEETTK
KRMTPLRPPSESEALAGQQQISMETLVEIVQANDLGDYRILANELLEQHDAVDLVAAAIK
SMTKEPDETPVTITEERPLPMRKDRSSGGRSGRDRGPRRDGGRGGRPTSRDRNRREGGRR
ESSERRRPRRRDS
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
ttgacaaatttttcagaattaaacattagcgaatctacattaaggtctttacaacgtatg
ggctttgaagaagctacaccaatacaagaaggaacagttaaatttgcccttgagggaaga
gatataatcggacaagctcaaactggtactggtaaaacagcagcatttggtatcccgatt
attgaaaaaattgatcctaaaaacacatcaatacaagcattgattattgcaccgactcgt
gagcttgcaattcaagtatcagaagagatttataaaattggatatgataaacgagtgaaa
atcttatccgtttatggcggtcaagatatcggacgtcaaattcgtgcattaaaaaataga
cctcaaattatcgtgggtacacctggtcgaatcatagaccatattaaccgtcatacatta
aagcttgagaacgttcaaacgctagtattagacgaagcggacgaaatgttaaacatgggc
ttcatcgatgatattaacgctattttagaaaatgtccctgaagaaagacaaacattactt
ttctcagcaacaatgccaccagctattcgtaaaattgcgacgaacttcatgaaaaaccct
gaagaagttaaaatcaagtcaaaagaaatgacagttgaaaacatagaccaatatttcgtg
aaatcacaagaacgtgaaaaattcgaaatactatctcgtttattaaatgtgcaccaaccg
gaattagcaattgttttcggtcgtacgaaacgccgtgtagatgaattagcacaagcatta
agtattcgtggttacttagctgaaggaattcatggcgatttaagccaagcaaaacgttta
tctgttttacgtcaatttaaggaaaataaaattgatattctagttgcaacagacgtagct
gctcgtggattagatatctcaggcgtaacacacgtttataactttgatattccacaagat
cctgagtcatatgttcaccgtattggtcgtacaggacgtgctggaaaatcagggcttgcc
gttacctttgtaacgcctagagaaatgggctatttacggattgttgaggaaactacgaaa
aaacgtatgacacctcttcgtccgccatcagaatcagaagctttagcaggtcaacaacaa
atttcaatggaaacgttagttgaaattgttcaagcgaatgatttaggagactatcgtatt
ttagcaaatgaacttttagaacagcatgacgctgttgatttagtggctgcagctattaaa
tcaatgacaaaagaaccggatgaaacgcctgtaacaataacagaagaacgtccattgcca
atgcgaaaagaccgttcaagcggtggtcgcagtggtcgtgatcgtggcccacgccgagat
ggcggtcgaggtggccgtccaactagtcgtgatcgaaacagacgtgaaggtggccgtcgt
gaaagtagtgagcgtcgacgtccacgccgtcgcgacagctaa
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