KEGG   Lysinibacillus sp. Ag94: MY533_05240
Entry
MY533_05240       CDS       T10411                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
lyq  Lysinibacillus sp. Ag94
Pathway
lyq02024  Quorum sensing
lyq03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lyq00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    MY533_05240 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    MY533_05240 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lyq03019]
    MY533_05240 (hfq)
   03036 Chromosome and associated proteins [BR:lyq03036]
    MY533_05240 (hfq)
Messenger RNA biogenesis [BR:lyq03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     MY533_05240 (hfq)
Chromosome and associated proteins [BR:lyq03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    MY533_05240 (hfq)
SSDB
Motif
Pfam: Hfq Hfq_1 LSM
Other DBs
NCBI-ProteinID: UPW84279
LinkDB
Position
1181142..1181372
AA seq 76 aa
MKSINLQDTFLNHLRKNNVFVTVFLLNGFQLKGTVKSYDNFTVLLLDAESKQHLIYKHAI
STFVPAKQIDFLETEE
NT seq 231 nt   +upstreamnt  +downstreamnt
atgaaatcaattaacttgcaagatacattcttaaaccatctacgtaaaaacaatgttttt
gtaactgtgtttttgttaaacggatttcagttaaaaggaactgtgaaatcctatgataat
tttacagttttattactagatgctgaaagcaagcaacatcttatttacaaacacgctatt
tctacatttgttccagcaaagcaaatagattttttagaaacagaagaatag

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