Lysinibacillus sp. Ag94: MY533_05240
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Entry
MY533_05240 CDS
T10411
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
KO
K03666
host factor-I protein
Organism
lyq Lysinibacillus sp. Ag94
Pathway
lyq02024
Quorum sensing
lyq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lyq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MY533_05240 (hfq)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
MY533_05240 (hfq)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lyq03019
]
MY533_05240 (hfq)
03036 Chromosome and associated proteins [BR:
lyq03036
]
MY533_05240 (hfq)
Messenger RNA biogenesis [BR:
lyq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
MY533_05240 (hfq)
Chromosome and associated proteins [BR:
lyq03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
MY533_05240 (hfq)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq
Hfq_1
LSM
Motif
Other DBs
NCBI-ProteinID:
UPW84279
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All DBs
Position
1181142..1181372
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AA seq
76 aa
AA seq
DB search
MKSINLQDTFLNHLRKNNVFVTVFLLNGFQLKGTVKSYDNFTVLLLDAESKQHLIYKHAI
STFVPAKQIDFLETEE
NT seq
231 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcaattaacttgcaagatacattcttaaaccatctacgtaaaaacaatgttttt
gtaactgtgtttttgttaaacggatttcagttaaaaggaactgtgaaatcctatgataat
tttacagttttattactagatgctgaaagcaagcaacatcttatttacaaacacgctatt
tctacatttgttccagcaaagcaaatagattttttagaaacagaagaatag
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