Lysinibacillus sp. Ag94: MY533_19810
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Entry
MY533_19810 CDS
T10411
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lyq Lysinibacillus sp. Ag94
Pathway
lyq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lyq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MY533_19810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lyq03019
]
MY533_19810
03009 Ribosome biogenesis [BR:
lyq03009
]
MY533_19810
Enzymes [BR:
lyq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MY533_19810
Messenger RNA biogenesis [BR:
lyq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MY533_19810
Ribosome biogenesis [BR:
lyq03009
]
Prokaryotic type
rRNA helicases
MY533_19810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Helicase_RecD
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
UPW82913
LinkDB
All DBs
Position
complement(4187426..4188946)
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AA seq
506 aa
AA seq
DB search
MTNFSELNISESTLRSVKRMGFEEATPIQEGTIRFAIEGRDVLGQAQTGTGKTAAFGIPL
IEKIDPKNPNIQALVIAPTRELAIQVSEELYKIGYDKRVKLLSVYGGQEIGRQIRALKNK
PQIIVGTPGRIIDHINRRTLKLEDVQTLVLDEADEMLNMGFIDDINSILENVPSERQTLL
FSATMPPAIRKIAETFMRDPEIVKIKAKELTVDNIDQYFVKSAEREKFDILSRLLNVHQP
ELAIIFGRTKRRVDELAQALSIRGYLAEGIHGDLSQAKRISVLRQFKENKIDILVATDVA
ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKSGLAVTFVTPREMGYLRIVEETTK
KRMTPLRPPTTDEALVGQQRLALETLEGLIANNNLGDYRTLATELLENHDAIDVVAAAIR
SLTKEPDDTPVTITEERPLPMRRERSSNRGGDRGRGGNRNFNGRRDGGRGGDRRGGNGNR
RDGGRRDGGRREGGQGRSRAPRRHED
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
ttgacaaatttttcagaattaaatattagcgaatctacattacgctcagtaaagcgtatg
ggatttgaagaagcaacaccaatccaagaaggtactattcgttttgcaattgaaggccgt
gatgtattaggtcaagcgcaaacaggtacaggtaaaactgccgctttcgggattccactt
atcgaaaaaattgacccaaaaaaccctaatatccaagcattagtaattgctccaactcgt
gaattagcgattcaagtttcagaagagctatataaaattggttatgataaacgtgtaaaa
ttgttatcagtttacggtggtcaagaaatcggccgtcaaatccgtgcactaaaaaataaa
cctcaaattattgtaggtacacctggtcgtataattgaccatattaatcgtcgtacttta
aaattagaagatgttcaaacattggtacttgatgaagctgatgaaatgttaaacatgggc
tttatcgatgatattaattcaatcttagaaaacgtgccttctgaacgtcaaacattattg
ttctcagcaacaatgccaccagcaatccgtaaaattgctgagacatttatgcgtgatcca
gaaatcgtaaaaattaaagcgaaagaactaacagttgataacatcgatcaatattttgtg
aagtctgctgagcgtgaaaaattcgacattttatctcgtttattaaacgttcaccaacca
gaacttgctatcatctttggacgtacaaaacgtcgtgtggatgagcttgcacaagcatta
tcaattcgtggttatcttgctgaaggaatccatggtgacttaagccaagcgaaacgtatt
tctgtattacgtcagtttaaagaaaataaaattgatatccttgtggcaacagatgtagct
gctcgtgggcttgatatttctggtgtaacacatgtttataacttcgatattcctcaagat
cctgagtcttatgttcaccgtattggccgtacaggtcgtgcaggtaaatcaggtcttgca
gtaacatttgtaacaccacgcgaaatgggttacctacgtattgtagaagaaacaacgaaa
aaacgtatgacaccacttcgtccaccaacaactgacgaagcgctagtaggtcaacaacgc
ttagctctggaaacactagaaggtcttattgcgaacaataacctaggtgactatcgtaca
cttgcgacagaattacttgaaaaccatgatgcaatcgatgttgtagctgctgcaattcgt
tcattaacaaaagagccggatgacacgccagtaacaattactgaagaacgtccattacca
atgcgtcgtgagcgttctagcaaccgtggcggtgatcgtggacgcggcggtaaccgtaac
tttaacggacgtcgtgatggcggacgtggcggagatcgtcgtggaggaaatggaaatcgt
cgagatggcggacgccgtgatggaggtcgccgtgaaggtggacaaggtcgttcacgtgca
ccacgtcgtcacgaagactaa
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