Lysinibacillus sp. RS11: AB9L17_17130
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Entry
AB9L17_17130 CDS
T11529
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
lyr Lysinibacillus sp. RS11
Pathway
lyr03030
DNA replication
lyr03430
Mismatch repair
lyr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lyr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AB9L17_17130 (holA)
03430 Mismatch repair
AB9L17_17130 (holA)
03440 Homologous recombination
AB9L17_17130 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lyr03032
]
AB9L17_17130 (holA)
03400 DNA repair and recombination proteins [BR:
lyr03400
]
AB9L17_17130 (holA)
Enzymes [BR:
lyr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
AB9L17_17130 (holA)
DNA replication proteins [BR:
lyr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
AB9L17_17130 (holA)
DNA repair and recombination proteins [BR:
lyr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
AB9L17_17130 (holA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_delta_C
DNA_pol3_delta
HP_1247_M
TruD
DNA_pol3_delt_C
BSH_RND_rel
Motif
Other DBs
NCBI-ProteinID:
XGY93568
LinkDB
All DBs
Position
complement(3310836..3311846)
Genome browser
AA seq
336 aa
AA seq
DB search
MISTVWNNIKRGELAPVYLLVGEESYFIDETVKRLKEAIGPEEEIEMSTFDLEELPVDVV
MDEADTIPFFSERKLIIAKNASFLKATEKGKEKIDHDVKRLEAWLANPSDFSVTVFIAPY
EKLDERKKVTKIMKEHALLVQTETPKEQDLAVWIQSVVKAEGNSITQNAIEQLVAMVGPN
MLQLQMEIEKLTLYLGDGGEITATLVEDLVAKTLEQDAFKMLNAYFANDSVGALSIYHDL
LRQKQEPIMLVGLLASNVRTMSNVFYLLKKGYHPQQIAKNLKVHPYRVKLMVEQRNRPSE
ESLLKALYQLAKVDLQLKTAGGNRERYLELFLLRQF
NT seq
1011 nt
NT seq
+upstream
nt +downstream
nt
atgatttcaacggtttggaataatatcaaaagaggagagcttgcaccagtttatttactt
gttggtgaggaaagctattttatagatgaaacagttaaacgtttaaaagaggctatagga
cctgaagaagagatagaaatgtcaacatttgatttagaagaattgccagtagatgttgtt
atggatgaagcggatacaattccttttttctctgagcggaagctgatcattgcaaaaaac
gcatcttttttaaaggcaactgaaaagggtaaagagaaaatcgaccatgatgtaaaacgc
cttgaggcatggcttgcgaacccttccgatttttcagtaaccgtttttatcgcaccttat
gagaaattagacgagcgtaaaaaagtgacaaagataatgaaggagcatgcattattagtc
caaactgaaacgcccaaagagcaggatttagctgtctggattcaaagtgttgttaaagca
gagggtaacagtattacgcaaaatgcgattgagcagcttgtcgcaatggttgggccgaat
atgttacagttgcaaatggaaattgagaagctaactctctatttaggtgatggaggcgag
attactgctacgttagttgaggatttagtggcaaaaacattagagcaggatgcctttaaa
atgttaaatgcttattttgcgaatgactcagtaggggcattgtctatttatcacgattta
ctacgtcaaaagcaagagcccatcatgcttgttggattgcttgcatccaatgttcgtacg
atgtctaatgtgttttatttattaaaaaaaggctaccatccacagcaaattgccaaaaat
ttaaaagtacatccttatcgtgtcaaattgatggttgagcagcgtaatcgtccatcagag
gaaagtttattgaaggcgttgtatcaactagcaaaggtcgatttacagctgaaaacagcg
ggtggcaatcgtgagcgttatttagaactctttttactgcgtcaattttaa
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