Lysinibacillus sp. YS11: LBYS11_03440
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Entry
LBYS11_03440 CDS
T05299
Symbol
addB
Name
(GenBank) helicase-exonuclease AddAB subunit AddB
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
lys
Lysinibacillus sp. YS11
Brite
KEGG Orthology (KO) [BR:
lys00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lys03400
]
LBYS11_03440 (addB)
Enzymes [BR:
lys01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LBYS11_03440 (addB)
DNA repair and recombination proteins [BR:
lys03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
LBYS11_03440 (addB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ADDB_N
PDDEXK_1
UvrD_C
Motif
Other DBs
NCBI-ProteinID:
AUS85438
LinkDB
All DBs
Position
748501..752010
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AA seq
1169 aa
AA seq
DB search
MTLRIVSGRSGTGKSAFIHQEIVEQLKTDPLGHPIFIIVPDQMSYSTEYELTNKHGLQGL
IRAQVMTFKRLAWLVLQETGGIARKEVNGYGYRMLIRKLLEEQKSEFSLFRQAAGKRGFT
EEIETLLREFSRYSVNSSVLAEVTESLKAIDAPNTLQAKANDLHVVLQALEERLGTTYVD
SEGYYPILTEQLKYAETMKQATIYIDGFTAFTVRELELVRELLKVTKQVTVVLPFDHMDE
AFDEQALFHEAALTNQRLHDIAKEEGIDVELPLHFYKTQRFHSKDLQHVEAKFADLEPQT
IKTSGDVTVLEASNRRAEIHAIAREITKLTREDCFRYQDIVLLYRQADLYDPLITSIFQQ
YEIPIFTNTKKTMLHHPLIELSRSALEVMTSNWKYEPVFRSVKTDLFFPLQAELTIWRER
ADRLENYCLAQGIYGERWFEEARWFYKKYRGLEFHSRVQTDEERAMQAEIEAIRDEIRQP
LKLLQDKLDSAKNGRDIATALFELIESLQVYDKLQAMKDRELERGDALAASEHEQAWNEW
IAVLDQFVYMFGEQEMSVEQAAKILDEGFDTLEFSRIPPTLDEVMVATVDLARLSNIKVA
FVIGMNDGVYPTRMEYEGLLSDIEREWFSQIGYELAPTSTNRLLQENFLFYRAITTPSNK
LYMTYPTADEEGKALLASLYIKKIIGNDKKAGLLSGVSIERVVVDPIELLDGDVLPYLRH
PRTALAHLMVQLRQAEHSRELAPEWLALQRFYKQDPYWALIFDRVLYPITHKNEAEPLET
YITQELYGQKLTSSVSRIEKYFRCPFSHFTTYGLRLEERAEYRLETFAMGDLFHEALKWI
TEETHRQQLSWIRLTTRQIKQLARQAVEQIVPVFSHQILLSSARYRYIQRKLIRIVERTM
TALTQHANVSHFKPIAIEASFGPGQHEQLPPLEIDLTGGKKMFMRGRIDRVDSATIDDRS
YLRIVDYKSSARDLDLNEVYYGLSLQVLTYLDVAMENSSYWLSGEAEPAGVLYVHVHNPM
LKLDKDLTDSEIEEDRLKQYKMKGLLSENAEAILSMDEQLEESGGHSKIIPVYMKKDGTP
SESQSRIVPVNDMKKLQHFVRRKHQEAGNGILSGDTAISPYKLKAKTACDYCQFAAVCQF
DPSDGKQSYRQLMQAKPNDIVDKIRKEIE
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgacattgcgtattgtttcaggacgttcgggaacagggaaatccgcatttattcatcag
gaaattgttgagcaattaaagacagatccattgggacatccaattttcattatagtgcct
gaccaaatgtcttattctacggaatatgagctgacaaataagcatggtttacaaggcttg
attcgagcacaggtgatgacgtttaaacgtttagcatggttggttttacaggaaacagga
ggtattgctcgtaaagaagtgaatggctatgggtatcgaatgcttatacgtaaacttttg
gaggaacaaaaaagcgagttttccttatttcgacaagcagcaggaaaacgtggctttacg
gaggaaattgaaacccttttaagagaatttagtcgctatagcgtcaatagctcagtcttg
gcagaggtaacggaatcgttaaaggcaatagatgcacctaatacattgcaggcgaaagcg
aatgatttacatgtcgttttgcaggcattggaggaacgacttggtacgacctatgttgac
agcgagggctattatccgattttaacggagcaactgaagtatgcagaaacgatgaagcaa
gcgaccatctatattgatggtttcactgccttcactgtgcgagagttagaactggttcgt
gaattgttaaaggtaacgaagcaagtaactgtcgtccttccctttgatcatatggatgaa
gcctttgatgaacaagctttattccatgaagcagcgttaacgaatcaacgtcttcatgat
atagcaaaagaagagggcattgatgttgaattaccattacatttttataagactcaaaga
tttcattctaaagatttacagcatgtggaggcaaagtttgctgatttggagccccaaacg
ataaaaacttcaggagatgtaaccgtgcttgaagcatcaaatcgtcgagcagagatacat
gcgattgcccgggaaataacaaaactgacaagagaagactgttttcgctatcaggatatc
gtacttttgtatagacaagcagatctctacgatccacttattacaagtattttccaacaa
tatgaaattcctatttttacaaatacaaaaaagacaatgctacatcatccattaatagag
ctaagtcgttcagccttggaggttatgacctcgaattggaaatatgagccagttttccgt
agtgtcaaaaccgatttgtttttcccattacaagccgagctaacaatttggcgtgagcga
gcagatcgattagaaaattattgcttggcacaaggcatctatggtgaacgatggtttgag
gaggcacgttggttttataaaaaatatcgaggtctagaattccattcgcgtgtacaaaca
gatgaagagcgtgcaatgcaggcagaaatcgaggccattcgagatgaaattcgccaacct
ctaaaacttttacaagacaagcttgatagcgccaagaatggcagagatattgcgactgct
ttatttgaacttatagagtcattacaggtatatgataaactgcaagccatgaaagatcgt
gagctagagcgaggtgacgcattagctgcaagtgaacatgaacaagcttggaatgaatgg
attgctgttcttgaccaattcgtttatatgtttggagagcaggagatgtctgtagagcaa
gcagccaaaattcttgatgaaggctttgatacattagaattttcgagaattccgccaacc
cttgatgaagtaatggtggctactgttgatttagctcgtttatccaatatcaaagtcgct
tttgtaataggaatgaatgatggtgtttatccaactcggatggagtatgagggcttgttg
tcagatatcgaacgtgaatggtttagtcaaattggctatgagcttgctcctacctctact
aatcgtttattacaggaaaatttcttgttctatcgcgctattacaacgccatctaacaaa
ttgtatatgacctatcctacggcggatgaggaaggcaaggcacttctagcctcactttat
attaagaaaataataggaaatgacaaaaaggctggcttattaagtggtgtttcgatagaa
cgagtggtagtcgatccgattgaattactagatggggatgttttaccatatttacgccat
ccaaggactgcattggcacatctaatggtacagctacgtcaagctgaacatagccgtgaa
ctagcgccagaatggctagctttacaaagattttataaacaagatccgtattgggcactc
attttcgaccgcgtactttatccaattacccataaaaatgaggctgagccacttgaaacc
tatattacccaggaattatatggtcagaagctaacatccagtgtgtcgcgaattgagaaa
tacttcagatgtcctttttctcatttcactacgtatggcctacgtcttgaagaacgagct
gagtatcgtctagaaacgtttgcaatgggtgacttattccatgaggcattaaagtggatt
acagaggaaacacatcgtcagcaattatcttggattcgtttaacaacaaggcaaattaaa
caattagcacgtcaagcagtagaacaaattgttccagttttttcccatcaaatcctatta
tccagtgcccgctatcgctatattcagcgtaagctaattcgaattgttgagcgtacaatg
acagcactgacacagcatgcaaatgtatcacacttcaaaccaattgcaattgaggcgtcg
tttggtcctggacaacatgaacagctaccaccattagagattgatttgactggtggtaag
aaaatgtttatgcgtggacgtattgatagagtggatagtgcaacgatagatgaccgctct
tatttgcggattgtcgactataaatcctcagctcgtgaccttgatttaaatgaggtttat
tacggattatccttacaggtcctaacgtatttagatgtggcaatggaaaatagttcatac
tggctatcaggtgaagcagagccagcaggggtactgtatgtccatgtccataatccgatg
ctgaagctggataaagatttgacggacagtgaaatagaagaggatcgtttaaagcagtat
aaaatgaaaggtttgctatctgaaaatgctgaagcgattttatcaatggacgagcaatta
gaagaaagtggtggacattcaaaaatcattcctgtctatatgaaaaaagatggaacaccg
tcagaatcacaatcgcgtatagttcctgtcaatgatatgaaaaagttgcagcattttgtt
cgtcgtaaacatcaggaggcagggaatggtatcttatctggtgatacggccattagcccc
tataaattaaaagctaaaacggcatgtgattattgtcaatttgctgcggtttgccaattt
gatccatcagatggtaaacaaagctatcgtcaattaatgcaagcaaagccgaatgatatt
gtcgataaaattcggaaggagatagaatag
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