Lysinibacillus sp. YS11: LBYS11_05390
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Entry
LBYS11_05390 CDS
T05299
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
lys
Lysinibacillus sp. YS11
Pathway
lys03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lys00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LBYS11_05390 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lys03019
]
LBYS11_05390 (rny)
Messenger RNA biogenesis [BR:
lys03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LBYS11_05390 (rny)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
KH_2
DUF3450
Motif
Other DBs
NCBI-ProteinID:
AUS85804
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Position
1161640..1163199
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AA seq
519 aa
AA seq
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MDGITIISALLGLIVGAAVSYIYMKKVNDSKITGAKHVAETIVEEGKREAEAMKKEALLE
AKDETHKFRTEAENDIRERRLELQKQENRLLQREENLDRKDDALNKREAGLERKEQALAE
RQQHIEQMESKVDELMASQKTELERISALTRDEAKSIILNEVEKELSTDIAVMTKEAETR
AKEDSDKKAREILSLALQRFAADHVAETTVSVVNLPNDEMKGRIIGREGRNIRTLETLTG
IDLIIDDTPEAVILSGFDPIRRETARLALEKLVQDGRIHPARIEEMVEKARREVDEQIRE
TGEQTTFEIGIHNLHPDLMKILGRMKYRTSYGQNVLKHSIEVAHLAGLLAAELGEDVALA
RRAGLLHDIGKAIDHEVEGSHVEIGVELATKYKEHPVVINSIASHHGDTEATSVIAVLVA
AADALSAARPGARSETLENYIRRLEKLEEISESYDGVEKSYAIQAGREIRIIVQPEKIDD
LASHRLARDIRKRIEEELDYPGHIKVTVIRETRAVEYAK
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atggatggaattactatcatctccgctttgcttggactcatcgttggtgccgctgttagc
tatatctacatgaaaaaagtgaatgactcaaaaatcactggtgctaaacatgtcgctgaa
acaatcgttgaagaaggaaaacgagaagcggaggcaatgaagaaagaagcactacttgaa
gccaaagatgaaactcacaaatttcgtactgaagctgaaaatgacattcgtgaacgtcgt
ttagaacttcaaaaacaagagaaccgtttattgcaaagagaagagaatcttgatcgcaaa
gatgatgctctaaataagagagaagctggcttagagcgcaaagaacaagctctagctgaa
agacaacagcatattgaacagatggagagcaaagtggacgagctcatggcatcacaaaaa
acagagttagaacgtatttctgctttaactagggatgaagctaaatcaattatcctcaat
gaagtagaaaaagagttatcaactgatattgctgtgatgacgaaagaagctgaaacacgt
gcgaaagaagactcagataaaaaagcacgtgaaattttatcattagcactacaacgcttt
gctgcagatcacgtagcagaaacaactgtatctgttgtgaacttgccaaatgatgaaatg
aagggacgtattattggtcgcgaaggccgtaatatccgtacattggaaacgttaacagga
attgatttaattattgatgatacgccagaagcggttatattatcaggctttgatccaatt
cgccgtgaaacagctcgacttgcacttgaaaaacttgtacaggatggtcgtattcaccca
gctcgtattgaggaaatggtggaaaaagctcgacgtgaagtggatgaacaaatccgcgaa
acaggtgagcaaactacatttgaaattggtattcataacttacatccagatttaatgaaa
attttaggccgcatgaaatatcgtacaagctatggacaaaatgtcctaaaacattcaatt
gaagtcgcacatttagcaggattacttgctgctgaacttggtgaagatgtagcattggct
cgtcgtgcaggcttattacatgatattggaaaagcaatcgatcatgaagttgaaggaagc
cacgttgaaataggtgtggaattagcaacaaagtataaggaacacccagttgtcattaat
agtattgcttcgcatcatggtgatactgaagcaacatctgttattgcggtattagtcgct
gcagctgatgcattatcagctgctcgtccaggtgcacgtagtgaaacacttgaaaactat
atccgcagacttgaaaagttagaggaaatttcagaaagctatgatggcgtagaaaaatct
tatgcgattcaagctggacgtgaaattcgtattattgtacaacctgaaaaaattgatgat
ttagcgtctcatcgtcttgcgcgtgatattcgcaaacgtattgaggaagaactcgattat
ccaggtcatattaaagtaacagttattcgcgaaacacgtgctgtggaatacgcgaaataa
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