KEGG   Lysinibacillus sp. YS11: LBYS11_14130
Entry
LBYS11_14130      CDS       T05299                                 
Symbol
lpdA
Name
(GenBank) dihydrolipoyl dehydrogenase
  KO
K00382  dihydrolipoyl dehydrogenase [EC:1.8.1.4]
Organism
lys  Lysinibacillus sp. YS11
Pathway
lys00010  Glycolysis / Gluconeogenesis
lys00020  Citrate cycle (TCA cycle)
lys00260  Glycine, serine and threonine metabolism
lys00280  Valine, leucine and isoleucine degradation
lys00310  Lysine degradation
lys00380  Tryptophan metabolism
lys00620  Pyruvate metabolism
lys00630  Glyoxylate and dicarboxylate metabolism
lys00640  Propanoate metabolism
lys00670  One carbon pool by folate
lys00785  Lipoic acid metabolism
lys01100  Metabolic pathways
lys01110  Biosynthesis of secondary metabolites
lys01120  Microbial metabolism in diverse environments
lys01200  Carbon metabolism
lys01210  2-Oxocarboxylic acid metabolism
lys01240  Biosynthesis of cofactors
Module
lys_M00009  Citrate cycle (TCA cycle, Krebs cycle)
lys_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
lys_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA
lys_M00621  Glycine cleavage system
Brite
KEGG Orthology (KO) [BR:lys00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00010 Glycolysis / Gluconeogenesis
    LBYS11_14130 (lpdA)
   00020 Citrate cycle (TCA cycle)
    LBYS11_14130 (lpdA)
   00620 Pyruvate metabolism
    LBYS11_14130 (lpdA)
   00630 Glyoxylate and dicarboxylate metabolism
    LBYS11_14130 (lpdA)
   00640 Propanoate metabolism
    LBYS11_14130 (lpdA)
  09105 Amino acid metabolism
   00260 Glycine, serine and threonine metabolism
    LBYS11_14130 (lpdA)
   00280 Valine, leucine and isoleucine degradation
    LBYS11_14130 (lpdA)
   00310 Lysine degradation
    LBYS11_14130 (lpdA)
   00380 Tryptophan metabolism
    LBYS11_14130 (lpdA)
  09108 Metabolism of cofactors and vitamins
   00785 Lipoic acid metabolism
    LBYS11_14130 (lpdA)
   00670 One carbon pool by folate
    LBYS11_14130 (lpdA)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:lys04147]
    LBYS11_14130 (lpdA)
Enzymes [BR:lys01000]
 1. Oxidoreductases
  1.8  Acting on a sulfur group of donors
   1.8.1  With NAD+ or NADP+ as acceptor
    1.8.1.4  dihydrolipoyl dehydrogenase
     LBYS11_14130 (lpdA)
Exosome [BR:lys04147]
 Exosomal proteins
  Exosomal proteins of breast cancer cells
   LBYS11_14130 (lpdA)
SSDB
Motif
Pfam: Pyr_redox_2 Pyr_redox_dim Pyr_redox GIDA FAD_oxidored Pyr_redox_3 FAD_binding_3 DAO FAD_binding_2 AlaDh_PNT_C HI0933_like NAD_binding_8 3HCDH_N Thi4 NAD_binding_7 2-Hacid_dh_C Lys_Orn_oxgnase Trp_halogenase
Other DBs
NCBI-ProteinID: AUS87404
LinkDB
Position
complement(2848775..2850202)
AA seq 475 aa
MAQNYDVVILGGGTGGYVAAIRAAQLGLKTAIVERERLGGTCLHKGCIPSKALLRSAEVY
RMANKTASEYGVDIEGVTLQFDKVQARKQAIVEQLSQGVNTLMKKGKIDVYHGTGRILGP
SIFSPMPGTISVEMSNGDENEMLVPTNVVIATGSKPRGMAGLSIDGQYVLNSDHALQLES
LPKSLLIVGGGVIGIEWASMLCDFGVYVTVVEYGPSILPAEDADIVKEVTKQLEKRGVRI
VTNARLDTNTFKIENDNVFISAQVNEKEEVFEADKLLLCVGREANTQGIGLENTEIEVEN
GFIKVNGSYQTKESHMYAIGDVIGGLQLAHVASHEGLSAIEHIATGKTETLDALKVPKCV
YSYPEVASIGLTESAAKEQGFSLKIGKFPFKAIGKALVNGETEGFVKIIADEETDDILGI
HMVGPHVTDLIGEASLAKVLDATPWEISQAIHPHPSLNEVLVESALAVDDRAIHF
NT seq 1428 nt   +upstreamnt  +downstreamnt
atggctcaaaattatgatgttgtcattttaggtggaggtacaggtggatatgttgcagcc
atccgagctgctcagctaggcttaaaaacagccattgtagagcgtgagcgtttaggaggt
acatgcttgcataaaggctgtattccaagtaaagcgttactccgaagtgccgaagtatat
cgtatggctaataaaacagctagcgaatatggtgtcgatattgaaggtgtaacattacaa
tttgacaaagttcaagctaggaaacaagcaatcgttgagcaattaagccaaggtgtgaat
acactgatgaaaaaaggcaaaatagatgtttatcatggtacagggcgaattttgggtcca
tctattttctcacctatgcctggtacaatatctgtagaaatgtccaatggcgatgaaaat
gaaatgcttgtgcctacgaatgttgtcattgcaacgggctcaaagcctcgtggtatggca
gggttatcgatagatgggcaatatgtgctgaattcagaccacgcattacagttagaaagt
ttaccaaagtcactgctaatcgttggtggtggtgttattggaattgagtgggcatctatg
ctatgcgattttggtgtatatgtaacagtagtagaatatggtccatccattttaccagct
gaagatgcggacatcgttaaagaagtgacgaaacaacttgagaaacgaggcgttcgtatt
gttacgaatgctcgcttagatacaaatacattcaaaattgaaaatgataacgttttcatt
tctgcgcaagtgaatgaaaaagaagaagtttttgaggctgataaactattactttgtgta
ggacgtgaggcgaatacgcaaggtattggtctagaaaatacagagattgaagtggaaaat
ggctttattaaagtgaatggttcctatcaaacgaaagagtctcatatgtatgccatagga
gatgtgattggtggcttacaattagcgcatgttgcttctcatgaagggctttcagctatt
gagcatatagcaacagggaaaaccgagacattggatgcactaaaagtaccgaaatgtgtt
tattcctatccagaggttgctagcattggattaacagaaagtgctgctaaagaacaagga
ttttcattaaagattggtaaattcccgtttaaggccattggtaaagcattagtaaatgga
gagacagaaggctttgtcaaaattattgctgatgaagaaacagatgatattttgggtatt
catatggtagggcctcatgtaacagatttaattggtgaagcatccttagcaaaagtgtta
gatgcaacaccatgggaaattagtcaggcaattcatccacatccatccttaaatgaggtg
ttagtggagtctgctctagcagtggatgatcgcgctatccatttttaa

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