Lysinibacillus sp. YS11: LBYS11_15555
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Entry
LBYS11_15555 CDS
T05299
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
lys
Lysinibacillus sp. YS11
Pathway
lys03410
Base excision repair
lys03430
Mismatch repair
lys03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lys00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LBYS11_15555 (recJ)
03430 Mismatch repair
LBYS11_15555 (recJ)
03440 Homologous recombination
LBYS11_15555 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lys03400
]
LBYS11_15555 (recJ)
DNA repair and recombination proteins [BR:
lys03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
LBYS11_15555 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
LBYS11_15555 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LBYS11_15555 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ssDNA-exonuc_C
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
AUS87662
LinkDB
All DBs
Position
complement(3128736..3131066)
Genome browser
AA seq
776 aa
AA seq
DB search
MILSKKRWQVERPDATLVQALQNDLQLSAIAAKILAARGCETTAEAESLLNMTEANIHDP
FLMHGMAEAVARIEQALENGEKILVYGDYDADGVTSTTVMLHVLLDLGADVSFKIPNRFI
HGYGPHEALFREAYEDGVQLIITVDNGISGIEPIRVAKELGMDVIVTDHHEPGEELPPAD
IILHPRIPEGQYPFGELAGVGVAFKLAHALYGELPSHLIEFVAIGTVADLVPLVDENRYL
VKRGIQEMRRSLSPWVQAMCDIASTEQTKITEETIGFYFGPRLNAVGRLGEAAPGVELLM
AEDNAKATALAKKLNACNTERKDIVKSITDEAIALIEADEKIGNSLVLVVAGEGWNAGVV
GIVASRLVELYYRPTIVLSLDPEKGIAKGSARSIEGFHLYNELAKNRDILPHFGGHPMAA
GMTLSLEHVDELRTRLDAQARACLTEEQLTPVVHIDIPLSIDEISADAIEEISTLGPFGT
DFPKPVYVLEDVEIASMRKIGAGENHIKMEITNGYDKLDSVGFNKGHLHDELTYGIKVSF
IGDLQINEWQGRKKAQFMIEDVQTTEWQLFDIRGIRQTARWLNTVPKDVARFIAFRPETM
TYYQSLIGAPITLVDPALSNIEQSDYIVLLDLPHNVQKLEDVLQKTAPSRIYAHFYMPDS
QYFSGLPTREQFAWYYKFLKNRPAFPLDMHIADLAKHTGWPLDTLKFMTQVFFELDFVKM
ESGLTTVNVNAPKQALTEAPSYKQRSEQIEMEQKLVYAPYIELKQWFDERLTSADE
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
atgattctatcgaaaaaaagatggcaggtggagcgtcctgacgcaacacttgtacaagca
ttacaaaatgacttacaactttctgcaattgcagcaaaaattttagcagcacgaggctgc
gaaacaacggctgaggcagaaagcttattaaatatgactgaggcaaatatccatgaccca
tttcttatgcatggtatggctgaagcggtagcacgaattgaacaagcactagaaaatggt
gagaaaattttagtgtatggtgattatgatgcggatggtgtgacaagcacaaccgttatg
ttacatgttttactagatcttggagcagacgtctcctttaaaattccgaatcgttttatc
catggctatggtccgcatgaagccctatttcgggaggcctatgaagatggtgtacagtta
atcattacagtggataatggtatatctggtattgagcctattcgagtagcaaaggagctt
ggtatggatgtcattgtgacagatcaccatgagccaggtgaggagctaccaccagcagat
attattcttcatccccgaataccagaagggcaatatccatttggcgagctagcaggagta
ggggtagcctttaagctggcacatgctctttatggtgaactaccaagccatctaatagaa
tttgtggcgattggcactgtagcagatttggttccgttggtggatgaaaatcgctatctc
gtgaagaggggcatacaagaaatgcgtcgttcccttagtccatgggtacaagcgatgtgt
gacatagccagtacagagcagacgaaaattacagaagaaacgattggcttttattttggt
ccacgattgaatgctgttggtcgtctaggtgaagcagctcctggtgtcgaattattaatg
gcggaggataatgctaaagcaaccgcattggcaaaaaagctaaatgcctgcaataccgag
cgtaaagatattgtgaaaagtattacagatgaagccatcgcactgattgaagcagatgaa
aaaatcggcaattccttagttcttgttgttgctggcgagggctggaacgcaggtgttgta
ggaattgtagcctcacgtcttgttgaactgtattaccgtccaacgattgtgctgtcactc
gatcccgaaaagggcatagcaaaaggttctgctcgaagtattgaaggttttcatctatat
aatgaactagctaaaaatcgagatattttaccgcattttggtggacatcctatggctgca
ggtatgaccctatcattagagcatgtggatgaactacgtactcgcttagatgctcaggca
agagcctgtttaacagaggagcaattaacacctgtagtgcatattgatataccgctcagc
atagacgaaatttcagcggatgctattgaggaaatttcaacactaggaccatttggcaca
gatttccctaagcctgtgtatgtgctagaggatgtagaaatcgcctccatgcgtaaaatt
ggagcgggcgagaatcatattaaaatggaaataacaaacggctatgataaattggatagt
gttggttttaacaaagggcatttacatgatgaattaacgtatggcatcaaagtttccttt
ataggcgatttgcaaattaacgaatggcagggacgtaaaaaagcccaatttatgatcgag
gatgtccaaactacagaatggcagttatttgatattcgtggtatccgtcaaacagctcga
tggctgaatacggtaccgaaggacgtggcccggtttatcgcctttcgtccagaaacgatg
acctattatcaatcattaatcggtgcacctattacactggttgacccagccctttcaaat
attgaacaaagtgattacatcgtgctcttagacttgccacacaatgttcaaaagctagag
gacgttttacagaagacagccccttcacgtatttatgctcatttttatatgcctgactcg
caatacttcagtggtctacctactcgtgagcaatttgcttggtattataagttcttgaaa
aatcgaccagcctttccgcttgatatgcatatcgcagatttagcgaagcatacggggtgg
ccattagatacattaaaatttatgacacaggtgttttttgagcttgattttgttaaaatg
gagagtggactgacgactgtcaacgtgaatgctccaaaacaagcactaacagaggcaccg
tcttacaaacaacgttcagaacagattgaaatggagcaaaagcttgtctatgctccttat
atagaattaaaacaatggtttgatgaacgtttaacatcagcggacgaataa
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