Lysinibacillus sp. YS11: LBYS11_16915
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Entry
LBYS11_16915 CDS
T05299
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
lys
Lysinibacillus sp. YS11
Pathway
lys03030
DNA replication
lys03410
Base excision repair
lys03420
Nucleotide excision repair
lys03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lys00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LBYS11_16915
03410 Base excision repair
LBYS11_16915
03420 Nucleotide excision repair
LBYS11_16915
03440 Homologous recombination
LBYS11_16915
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lys03032
]
LBYS11_16915
03400 DNA repair and recombination proteins [BR:
lys03400
]
LBYS11_16915
Enzymes [BR:
lys01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LBYS11_16915
DNA replication proteins [BR:
lys03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LBYS11_16915
DNA repair and recombination proteins [BR:
lys03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
LBYS11_16915
NER (nucleotide excision repair)
GGR (global genome repair) factors
LBYS11_16915
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_polI_exo1
5_3_exonuc
HHH_5
HHH_2
NYN_YacP
Motif
Other DBs
NCBI-ProteinID:
AUS87915
LinkDB
All DBs
Position
complement(3377297..3379924)
Genome browser
AA seq
875 aa
AA seq
DB search
MTKEKLLLLDGNSLAYRAFFALPLLTNDSGIHTNAVYGFTTMLQRILEEEQPTKILVAFD
AGKTTFRHETFTEYKGGRQKTPPELSEQFPYLRKLIDAYGIKQYEQELYEADDIIGTLAK
EASSQDMDVIIVSGDRDLTQLATEQVTVYITKKGITEIEKNTPAFIAEKYGLTPLQIIDM
KGLMGDSSDNIPGVPGVGEKTAVKLLKEHGSVEALYEAMDTLKASKMKEKLVANEEQAIM
SKKLATIYTDAPITISLADLAYNGPKEDELINVWRELGFKSLLDKSDFTVQEEEQAPLDY
DLVQEVRPEDLKDVMAVHVELENEHYHTCQQLGIALSDGVKTQYIPFDKAAKSDILRRWL
EDATKIKYISDSKAAQASLKRAGIQLAGVDFDLLLASYINNPALSGDDIATLARELGYYD
VQADEAVYGKGAKRAIPDLDQLAQHVSRKAFAVWSLQPKLEALLKENEQFDLYKNLELPL
AGILGEMESEGITVNRATLEKMGQELNDKLVVIEQEIYAEAGETFNINSPKQLGVILFDK
LGLPVIKKTKTGYSTAADVLEKLQSEHAIIEHILLYRQLGKLQSTYIEGLLKEIHVSDSK
VHTRFQQALTATGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSKDDWILFSADYSQIELRV
LAHMSEDKNLVEAFREGMDVHTRTAMDVFHVSEDEVDSNMRRAAKAVNFGIVYGISDYGL
SQNLDITRKEAANFIEKYFASFPGVKQYMDDIVQNAKFNGYVTTILNRRRYLPDITSSNF
NLRSFAERTAMNTPIQGSAADIIKKAMIDMDARLKKEKMQAKLLLQVHDELIFEAPKEEI
ALLEKIVPEVMENAIELAVPLKVDFNHGSTWYEAK
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgaccaaggaaaaattactattattggacggtaatagtttagcgtatcgcgcgtttttt
gcgttgccattgctaacgaatgatagtggcattcatactaatgctgtatacggctttaca
acaatgctacaaagaatattagaggaagaacagccaaccaaaatattggttgcttttgat
gctgggaaaacaacattccgccatgaaacctttacagaatataaaggaggacgtcaaaag
acaccaccagaattatcagagcaatttccttatttacgaaagctcattgatgcgtatggt
attaagcaatatgagcaggagttatatgaagcggatgatattatcggaacgcttgctaaa
gaggcttcgtcgcaggatatggatgttatcatcgtttctggagaccgtgatttaactcag
ctggcgacagagcaagtaaccgtttatataacgaaaaaaggtattacggaaatagagaaa
aatacaccagcctttattgcggaaaagtatgggttaacgccgctccaaattattgatatg
aaaggcttgatgggggattcctccgataatattcctggtgtaccaggcgtcggggaaaaa
acggctgtaaaattattaaaagagcatggctccgttgaagcactttatgaagcaatggat
acattgaaagcttctaaaatgaaggaaaagcttgtagctaatgaagagcaagccatcatg
agtaagaagctggcaacgatttatacggatgctccaatcaccatttcactggctgatctt
gcatataatgggccaaaagaagatgaattaatcaatgtgtggcgtgagcttggctttaaa
tcgctgcttgataaaagtgactttacagtgcaagaagaagaacaggcgcctctcgattat
gacctagtccaggaagttcgacctgaggatttaaaagacgtgatggccgtgcatgtagag
cttgaaaacgagcactatcatacttgtcagcagctgggaattgccttatcagatggcgta
aagacgcaatatattccatttgataaagcagcaaaatcagatattctccgtcgttggcta
gaagatgccacaaaaataaaatatatatccgattctaaggcagctcaagcatcattaaag
cgagctgggattcaattagctggcgttgactttgatttgctacttgcctcttatattaat
aatccagcattaagtggcgatgatatcgcaacacttgcaagggaattaggctactatgat
gtccaagcagatgaagcggtatatggaaaaggtgccaagcgtgcaattcctgatttggac
caacttgcacagcatgttagccgtaaagcttttgcagtatggtcattacagccgaaactg
gaagccttattaaaggaaaatgaacaattcgatctttataaaaacctagagctaccattg
gcaggaattttaggtgaaatggaaagcgaagggattacggttaaccgcgctacgttagag
aaaatggggcaagagcttaatgataaacttgtagtaattgagcaagaaatttatgcagaa
gctggagaaacctttaatattaattcaccaaaacaattaggtgtgattctattcgataag
ctagggctacctgtgattaaaaagactaagacaggctattcaactgctgcagatgtccta
gaaaaattacagtcagagcatgctatcatcgaacatattctgttgtatcgccaacttgga
aaattacaatccacatatattgaaggcttactaaaggagattcatgtatcagatagtaaa
gtgcatacgcgcttccagcaagctttaactgcaacagggcgtttaagctcaacagatccg
aatttacaaaacatcccaattcgtttggaggagggccgcaaaattcgtcaagcctttgta
ccttcaaaagatgattggatattattttctgctgactattcgcaaattgaattacgtgtt
cttgcgcatatgtcagaagataaaaaccttgttgaggctttccgtgaaggaatggacgtt
catacacgtacagctatggatgtatttcatgtgtcagaagatgaggttgatagtaatatg
cgtcgcgcagcgaaagctgttaactttggaatagtctacggtattagtgattatggtcta
tcacaaaacttagatattacgcgtaaggaagcagctaattttattgaaaagtatttcgca
agtttccctggtgtaaaacagtacatggatgacattgtacaaaatgcaaaatttaatggt
tatgtgacaacgatattaaatagacgccgttatttaccggatataacaagctcaaacttt
aatttaagaagctttgctgagcgtacggcgatgaatacgccaattcaaggtagtgcagct
gatatcattaaaaaggcaatgattgatatggatgctcgattgaaaaaagaaaagatgcag
gcaaaactgctacttcaagtgcacgatgagctaatctttgaggcaccaaaggaagagatt
gccttactcgaaaaaattgtacctgaagtcatggaaaacgctattgagcttgctgtaccg
cttaaagtagattttaaccatggctcaacttggtacgaggcaaaataa
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