Lysinibacillus sp. YS11: LBYS11_17015
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Entry
LBYS11_17015 CDS
T05299
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
lys
Lysinibacillus sp. YS11
Pathway
lys03030
DNA replication
lys03430
Mismatch repair
lys03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lys00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LBYS11_17015
03430 Mismatch repair
LBYS11_17015
03440 Homologous recombination
LBYS11_17015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lys03032
]
LBYS11_17015
03400 DNA repair and recombination proteins [BR:
lys03400
]
LBYS11_17015
Enzymes [BR:
lys01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LBYS11_17015
DNA replication proteins [BR:
lys03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LBYS11_17015
DNA repair and recombination proteins [BR:
lys03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LBYS11_17015
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
HHH_6
PHP
tRNA_anti-codon
Peptidase_MA_2
Motif
Other DBs
NCBI-ProteinID:
AUS87934
LinkDB
All DBs
Position
complement(3398876..3401959)
Genome browser
AA seq
1027 aa
AA seq
DB search
MTHVYTKMHTSADLLKSTIRLEQLIPFLQEQKTQACAIVNTKLYGLLPFCKALQQVNIHA
VIGLSVNVQWHDKTLPLVLYAQTQEGYQHLLKISSAISIRQDDMLPWKWLEGYSAGCIAL
LSSDDLTDVDDWQAMVSALVQLFNHHLYMGIARPGGIKAEQEDDFVSWCEEHAIALVASQ
SCYFLRPEDHFAYEVARAIDTGEKLGNTMQTADVQGYFAPTAFEWQNWFADRPDWLDASM
KMLACCKADLPKMPVQMPRFPVPEGETAESLLVKEAFTGLEERFKQLAIPGAYHERLQYE
LEIICSMGFADYFLVVADFMRYAKENRILTGPGRGSSAGSLVAYSLSITQVDPLAYGLLF
ERFLNPERITLPDIDIDFVDSKRHQVIQYVAQKYGKANVAQIITFGTLSAKAVARDVARV
FGFDAEMLEKISKMIPNKPGITLQRAVAESQDFQGWLAENDKHLRWYEVALKLEGLPRNS
SIHAAGIVVAPSPLVNTVPIEEGHDGIYSTQWPMGDIEACGLVKMDFLGLRNLTILEQIR
WSIYKAGGPWIEFERIPLHDDKTFQLLQRGDTLGIFQLESDGMKQALRDICPTTFLDIVA
VNALYRPGPIDFIPVYAKRKAGREMVTMPHPVLEPILQETFGVIVYQEQIIKIASVLAGF
TMGQADLLRRAVSKKNRQVLEEQRTAFVQGALHQGFDQRLAEEVYELIVRFADYGFPKSH
AVAYSVISYQMAYLKAHFPQNFYAALLSNATGNVEKIQQFVHEAKDKGIPFYPPSLKSST
KYFTVEKEGIRYSLSGIKGVPHTFIEKIHGLRQTNPEVLNNLFDLAVALSAQHFKPKVLE
SLIYAGALDYLEKDRAVLIMTVEAALKHAELLRPTEDIDLASAMAFSFGKPKYMQAEAMS
QKEKLMHEKESLGFYISTHPVAQERLFWADINSTCRELKQKRDGTSIKMIGLIEEVKKIR
TKKGEQMAFVQLQDEFGTVSTTFFPQTFQLVQDLLVEEEMLWIEGVLERRFGKPQIKVKH
AQTTKKI
NT seq
3084 nt
NT seq
+upstream
nt +downstream
nt
ttgacacatgtatatacaaagatgcatacgagcgcggatttattgaaaagcacaattcgg
cttgagcaattgattccttttttacaagaacaaaagacacaagcctgtgcaatcgttaat
acgaaattgtacgggcttttgcctttttgtaaagcattgcagcaagtaaatatccatgcg
gttatagggctttcggttaacgttcagtggcatgataaaacgcttcccctcgtcctgtat
gcgcagacacaggagggctatcaacatttattaaagattagtagtgcgatttcaattaga
caagatgatatgctgccttggaaatggcttgagggatattcagcaggttgtatagcgcta
ctttcttcagacgatttaacagatgtagatgactggcaggcaatggtttctgctttggtc
caactgtttaaccatcacctctatatggggattgctagacctggagggataaaagctgaa
caagaagatgatttcgtttcttggtgtgaagaacatgctattgcacttgtagcctctcaa
agctgttattttttgcgtccagaagatcattttgcttatgaagtagcaagagcaattgat
acaggagaaaagcttggtaatactatgcaaacagctgatgtacagggctattttgcccca
acagcattcgaatggcaaaattggtttgcggatcgtccagattggcttgatgccagtatg
aaaatgcttgcttgctgtaaagctgatttaccaaaaatgcctgtgcaaatgcctagattt
cctgtacctgaaggtgaaacagctgaaagcttgcttgttaaagaagcatttactggatta
gaagagcgattcaagcaactggcaatacccggtgcttaccatgaacgattacagtatgaa
ctagaaattatttgctctatgggctttgctgactattttttggttgtggcggattttatg
cgatatgcaaaagaaaatcgaattttgacgggacctggacgtggttcttcagcaggttcg
cttgtggcatatagtctttcgattacccaagtagatccacttgcctatggtttattattc
gaacgttttttaaatcctgaaagaattaccttacctgatattgatatcgattttgttgat
agtaaaaggcatcaagtcattcagtatgttgcccaaaagtatggcaaagcaaatgtcgca
caaattattacatttggtacattgtctgcaaaagcagttgccagggatgttgcacgggta
tttggctttgatgcggaaatgctagaaaaaatttcgaagatgattccaaataagccggga
attacattacaaagagctgtagcagagtcacaggactttcaaggctggttagcggagaat
gataagcatttgcgttggtacgaggtggcgttaaaattggagggcctaccaagaaactcg
tctatacatgcagctggtattgtcgtcgctccatcgcctttagtgaatactgtaccgatt
gaagaagggcatgatggtatttatagtacgcaatggccaatgggagatattgaagcatgt
ggtctcgtcaaaatggattttttaggcttgcgcaatctcactattttagagcaaatacgt
tggtcaatttataaagctggtggtccttggatagaattcgagcgaatcccactgcatgat
gacaagacgtttcaactattacaaagaggggatacgctggggatttttcaattagaatca
gacggtatgaagcaagccttgcgtgatatctgtcctacaacctttttagatattgtggct
gtaaatgcactttatcgcccaggtccaatagattttattcctgtctatgcaaaacggaag
gctggcagagaaatggtaacgatgccacatccagtgctagagcctattttacaagagacc
tttggtgtgatcgtttatcaagaacaaattattaaaattgcatcagtactggcaggcttt
acaatgggacaggcagatttgcttcgccgagcagtgagtaaaaaaaatcgacaagtttta
gaggagcaacgcacagcatttgttcagggggcgctacaccaaggctttgatcagcgttta
gctgaagaagtatacgaactgattgtacgctttgcggattatggtttccctaaaagtcat
gctgtggcctatagtgttatttcctatcaaatggcttatttaaaggcgcatttccctcaa
aacttttatgcagcgttattatcaaatgccacgggaaatgtagaaaagattcaacaattt
gtccatgaggcaaaagataagggcatcccattttatccaccttcattaaaaagtagtacg
aaatattttacggtggaaaaggaaggcattcgctacagcttatcaggaattaaaggtgtg
cctcatacatttatagaaaaaatacatggactccgtcaaacaaatccagaggtattaaat
aacctatttgatctagctgttgccttaagtgcgcagcattttaagccaaaagtgttggaa
tcattgatatatgctggggcgcttgattatctagaaaaagatagagccgtcctcatcatg
acagttgaggcagctttgaaacacgcagaacttttaaggccaactgaagatattgattta
gcatcagcaatggcatttagttttggtaaaccaaaatatatgcaggcagaagcaatgtcc
cagaaggaaaaattgatgcatgaaaaagagagcttgggcttttatatttctacccatcca
gttgcacaggaaagactcttctgggcggatatcaatagcacctgtcgagagttgaagcag
aagcgtgatggtacctccataaaaatgattggtctgattgaagaagtgaagaaaatccgt
acgaaaaaaggtgagcaaatggcttttgttcagctacaggatgagtttggaacagtttcc
actacattttttccacaaacctttcagttggtccaagacctgctggtagaggaggaaatg
ttatggattgaaggtgttttagaaagacgttttggcaagccgcaaatcaaagtaaaacat
gcgcaaacgacgaaaaagatataa
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