Lysinibacillus sp. YS11: LBYS11_18725
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Entry
LBYS11_18725 CDS
T05299
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
lys
Lysinibacillus sp. YS11
Pathway
lys03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lys00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LBYS11_18725 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lys03019
]
LBYS11_18725 (rnr)
03016 Transfer RNA biogenesis [BR:
lys03016
]
LBYS11_18725 (rnr)
Enzymes [BR:
lys01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LBYS11_18725 (rnr)
Messenger RNA biogenesis [BR:
lys03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LBYS11_18725 (rnr)
Transfer RNA biogenesis [BR:
lys03016
]
Prokaryotic type
tRNA degradation factors
LBYS11_18725 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
S1_RRP5
CSD
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
AUS88212
LinkDB
All DBs
Position
complement(3727623..3730094)
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AA seq
823 aa
AA seq
DB search
MKDQKDTLQSRLLDFFSKDDYKPLTVGEIEDEFGFEDAEEFKELVKTLVRMEGQGLVVRS
RSNRYGLPERMNLLRGKFIGHAKGFGFVTPDVEGMDDVFIPPHEINGAINGDIVLIRVLK
ESFGDRREGTVTKVVERGQTSFVGTFQANRGFGFVVLDDKKLPMDIFIAKGDTLGAVDGH
KVVVEVATWPEDLKSATGYITKILGHKNDPGVDILSILYKHDIPPEFPDEVIAAAQRVPD
EITEADLVGRRDLRHETIVTIDGADAKDLDDAVTVTKNVDGTYKLGVHIADVSYYVTQGS
VIDIEAYDRATSVYLTDRVIPMIPHRLSNGICSLNPQVDRLTLSCEMIIDANGNVVAHEI
FQSVIKTTERMTYKDVYKILEEQDEALIERYEPLVPMFKNMAELSGILRRKREMRGAIDF
DFKESKVIVNEEGWPVDIELRERTVAEKLIEDFMLAANETVAEHFHWMNVPFLYRIHEDP
KPEKLQRFFEFVTNFGILIKGTGNTVHPKALQDVLKAIEGMPEEPVISTMLLRSMQQAKY
YPESLGHFGLSTDFYTHFTSPIRRYPDLVVHRLIRTYLINKDTSRETIAQWSMAMDEIAD
HTSERERRAVDAERDTDALKKAQYMSDKIGEEFEGIVSSITNFGIFVELPNTIEGLVHIS
NMTDDYYRFDDRQMIMIGERTNRQFRIGDEVTVRVANVIIEESSIDFEIVGMVTSYGRTR
KAAPTVIHARKNYSDNKGGRSRRSTRSDEEKGGRSGNRRGGRQEDDRGTRSSSKQGERRE
SDRDPRGRRKDDSSPGPKKRVKQKQKFYEGIAKKGKKKKTKRK
NT seq
2472 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatcaaaaagatacactacaaagtcgtttactcgattttttcagcaaagatgat
tataaaccactaaccgtcggtgaaatcgaggatgaattcggctttgaggatgcggaggag
ttcaaggagcttgtgaaaacacttgtccgcatggaagggcaaggcttagttgtacgctct
cgctccaatcgctatggcctaccagagcgtatgaatttgctaagaggtaaatttatcgga
catgcgaagggctttggcttcgtgacacctgatgtcgagggcatggatgatgtgttcatt
ccgccgcatgaaattaacggtgccattaacggagacatcgttctgattcgtgttttaaag
gaatcatttggtgatcgacgtgagggtacggttacaaaggtcgtcgagcgtgggcaaaca
agctttgtcggcacatttcaggctaaccgtggcttcggctttgttgtcctagacgataaa
aagctaccaatggatatctttattgccaaaggagatacattaggagctgtcgatggacat
aaggttgttgttgaggtagcaacatggccagaggatttaaaatccgctacaggctatatt
acaaaaattttagggcataaaaatgatccaggtgtggacattttatccattttatataag
catgacattccacctgaattcccagatgaagtcattgctgctgcacagcgcgtgcccgat
gaaattaccgaggccgatttagtaggtcgtcgtgatttacgtcatgaaacaattgtgaca
attgatggtgcagatgcaaaggatttagatgatgctgtaaccgtaacaaaaaatgtagat
ggtacgtataagcttggcgtacatattgcagacgtaagttattatgtaacgcaaggctca
gtcattgacattgaagcttacgatcgtgcgacaagtgtttatttaacagaccgtgtcatt
ccaatgattccacatcgtttatcaaacggcatttgttcattaaatccacaggttgaccgt
ttaacactatcctgtgaaatgattattgatgcgaatggtaatgtggttgcacacgaaatt
ttccaaagtgtcattaaaacgactgagcgtatgacgtataaggacgtttacaagatttta
gaggagcaggatgaggcattaattgaacgctatgagccacttgttccaatgtttaaaaac
atggctgagctatctggtattttacgccgtaaacgcgaaatgcgaggagctattgacttt
gacttcaaagaatccaaggtgatcgtaaacgaagaaggatggcccgttgatattgaatta
cgtgaacgaacagtagcggagaaattaattgaagatttcatgctagctgccaatgaaaca
gtggcagagcacttccactggatgaatgtaccgtttctataccgtattcacgaagatcca
aagcctgaaaagcttcaacgcttctttgaatttgtcacgaatttcgggattttaattaaa
ggtactggtaataccgttcatcctaaggcattacaggatgttttgaaggcaattgaaggt
atgccagaggagcctgttatctcaacgatgctcctacgttcaatgcaacaggcgaagtac
taccctgaaagtcttggacactttggcttatcaacggatttctatacacacttcacatca
ccaattcgtcgttatcctgacttagttgtacaccgtttaattcgtacgtatttaattaac
aaggatacatcgagagaaaccattgcacagtggagtatggcaatggatgaaattgctgac
cacacatctgagcgtgaacgtcgtgctgttgatgcagaacgtgatacagacgcactgaaa
aaagcacaatatatgtccgacaaaattggcgaagaattcgaaggaattgtttcatccatt
acaaacttcggaattttcgtggagctaccaaacaccatcgaaggacttgtccatattagc
aatatgacagatgattactaccgcttcgatgatcgtcaaatgattatgatcggtgaacga
acgaatcgccaattccgtattggtgatgaagtgacagttcgtgtggcaaatgtcattatt
gaggagtcatccattgactttgaaatcgttggaatggtaacttcatatggacgaacacgc
aaagcagcaccaactgttatccatgcacgtaaaaattacagcgataacaaaggtggacgc
agtcgccgaagcacacgcagtgatgaggaaaaaggcggacgtagtggcaatcgtagaggc
ggtcgtcaagaggatgaccgtggaactcgtagctcatcaaagcaaggtgaacgacgcgaa
agcgaccgtgatccacgtggacgccgcaaagatgactcaagcccaggtcctaaaaaacgc
gtgaaacaaaagcaaaagttctatgagggcattgccaaaaaaggcaaaaagaaaaaaaca
aaacgtaaataa
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