Lysinibacillus sp. YS11: LBYS11_22260
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Entry
LBYS11_22260 CDS
T05299
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lys
Lysinibacillus sp. YS11
Pathway
lys03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lys00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LBYS11_22260 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lys03021
]
LBYS11_22260 (rpoC)
03400 DNA repair and recombination proteins [BR:
lys03400
]
LBYS11_22260 (rpoC)
Enzymes [BR:
lys01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LBYS11_22260 (rpoC)
Transcription machinery [BR:
lys03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LBYS11_22260 (rpoC)
DNA repair and recombination proteins [BR:
lys03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LBYS11_22260 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AUS88827
LinkDB
All DBs
Position
complement(4427433..4431116)
Genome browser
AA seq
1227 aa
AA seq
DB search
MIDVNEFEYMKIGLASPDKIRSWSYGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLILDM
SPRALEEVIYFASYVVIDAGATNLESKQLLSEKEYRAYREKFGNTFEASMGAEAIKKLLG
KIDLEDETQSLKEELKSAQGQRRTRAIKRLEVVESFRNSGNSPEWMILDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPSIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKMYQCGLPKE
MAIELFKPFVMKELVERGLAHNIKSAKRKIERLNNDVWDVLEDVIREHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARLLMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTLEREGARGEGTVFYGPNEVLIAYDTGHVHLHTRIAIK
ASSLNNPTFTEEQNNMFLLTTVGKVIFNEILPESFPYINEPTDFNLEQVTPEKYFAKLTI
DEETLKELESDSAYNNLDEKGKIDAQRTAVLRKYFASVPVVNPFRKKFLGNIIAEVFKRF
HITETSKMLDRMKNLGFKYSTRAGITVGVSDIVVLPDKGEILAEAQEKVDKVQAQFRRGF
ITEDERYDRVISSWSAAKDEIQAKLMKSLEKTNPIFMMSDSGARGNASNFTQLAGMRGLM
ANPAGRIIELPIKSSFREGLTVLEYFISTHGARKGLADTALKTADSGYLTRRLVDVAQDV
IVREDDCGTDRGLTIGALMEGTELIEALDERIVGRHTKKTIFHPETGEVILAKDGLIDQD
IARAIIEAGIEEVTIRSAFTCNTKHGVCKKCYGMNLATGEKVEVGEAVGIIAAQSIGEPG
TQLTMRTFHTGGVAGDDITQGLPRIQEIFEARNPKGQSVISEIAGTVSDITEIREGLKEI
TIQGDVETRKYQAPYNARLKVIEGDNVERGQVLTEGSIDPKQLLKVKDVSTVQEYLLKEV
QKVYRMQGVEIGDKHIEVMVRQMLRKVRVIEAGDTELLPGSLLDIHQFSEANVDAVMNGK
NPATCRPVILGITKASLETESFLSAASFQETTRVLTDAAIKGKRDELLGLKENVIIGKLV
PAGTGMQRYRQIRIEKDELDTEVVSAE
NT seq
3684 nt
NT seq
+upstream
nt +downstream
nt
ttgatagacgttaatgaatttgaatatatgaaaattggtttagcatcacctgacaagatt
cgttcttggtcatatggagaggttaaaaaacctgaaacaattaactaccgtacactaaaa
ccagaaaaagatggtttattctgtgagcgtatttttggtccaactaaggactgggagtgt
cactgtgggaaatataaacgtgtacgctataaaggcgtagtttgtgatcgttgtggcgtt
gaagtaacacgtgctaaagttcgtcgtgaacgtatgggacatatcgaattagcagcacca
gtttctcatatctggtacttcaaaggtattcctagccgtatgggtctaattttagatatg
tcacctcgtgctcttgaagaagttatctatttcgcttcatacgttgtgatcgatgcaggt
gctactaatttagaaagtaaacaattactatctgaaaaagagtatcgtgcataccgtgaa
aaattcggtaatacattcgaagcatcaatgggtgcagaagcaatcaaaaaattattaggt
aaaatcgacctagaagatgaaacgcaatctttaaaagaggagttaaaatctgctcaaggt
caaagacgtactcgtgccattaaacgtctagaagttgttgaatctttccgtaactcagga
aactcacctgaatggatgattctagatgtactacctgttattccaccagagcttcgtcca
atggtgcaattagatggtggtcgtttcgcgacttcagatttaaacgatttataccgtcgt
gtaattaatcgtaataaccgtttaaaacgtttattagatttaggtgctccgagcatcatc
gtacaaaatgaaaaacgaatgttacaagaagctgttgatgcattaatcgataatggtcgt
cgtggacgtcctgtaacaggtcctggtaaccgcccgttaaaatcactttcacatatgttg
aaaggtaaacaaggtcgtttccgtcaaaatctacttggtaaacgtgttgactactctggt
cgttcggttatcgtagtaggtccaaacttaaaaatgtaccaatgtggcttaccaaaagaa
atggctatcgaattattcaagccattcgttatgaaagaattagtagagcgtggtcttgct
cataacattaaatctgctaaacgtaaaatcgaacgtttaaataacgacgtatgggacgtt
ttagaagatgttatccgtgagcatccagtattactaaaccgtgcaccaacgcttcaccgt
cttggaattcaagcatttgaaccaacactagttgaaggtcgtgctattcgtcttcaccca
ttagtatgtacagcctataatgctgacttcgatggtgaccaaatggcggttcacgtacca
ttatcagctgaagctcaagctgaagctcgtcttctaatgcttgctgcacaaaacatcctg
aatccaaaagacggtaaacctgttgtaacaccttctcaagatatggtattaggaaactac
tacttaacacttgaacgtgaaggcgcacgtggtgaaggtactgttttctatggtccaaat
gaagttttaattgcctatgatacaggtcatgtacacttgcatacacgtatcgcaattaaa
gcaagttcattaaataatccgacattcactgaagaacaaaataatatgttcttattaaca
actgtcggtaaagtaatctttaatgaaatcttaccggaatcattcccttatattaatgag
ccaactgatttcaacttagagcaagtaacaccagaaaaatactttgctaagttaacaatt
gatgaagaaacacttaaagagcttgaatcagatagtgcttataataatttagatgaaaaa
gggaaaattgatgcacaacgtacagctgtattgcgtaaatactttgcatcagtacctgtt
gtaaacccattccgtaagaaattcttaggaaatatcattgctgaagtatttaaacgtttc
cacattacggaaacatctaaaatgcttgaccgtatgaaaaacctaggtttcaaatattca
acacgtgcaggtattactgtaggtgtatctgatatcgtggtattacctgataaaggtgaa
attttagcagaagctcaagagaaagtagataaagttcaagcgcaattccgtcgtggtttc
attactgaggatgagcgttatgatcgcgttatttcaagctggagtgctgcaaaagatgaa
attcaagcgaagctgatgaagtcacttgagaaaacaaacccaattttcatgatgtctgat
tcaggtgcccgtggtaatgcatctaactttactcagctagctggtatgcgtggtctgatg
gccaacccggctggtcgtattatcgaacttccaatcaaatcttcattccgtgaaggttta
acagtattagagtacttcatctcaactcacggtgctcgtaaaggtcttgccgatacagcc
ctaaaaactgccgattcaggttacttaacgcgtcgtcttgttgacgttgcacaagatgtt
atcgttcgtgaagatgactgtggtactgaccgtggcttaacgattggtgcactaatggaa
ggcacagagttaattgaagctctagatgaacgtattgttggtcgtcatacgaagaaaaca
atcttccaccctgaaactggtgaagtaattcttgcaaaagacggtttaatcgaccaagat
atcgctcgtgcaattatcgaggctggtattgaagaagtgacaatccgttcagcatttaca
tgtaatacaaaacacggcgtttgtaaaaaatgttacggcatgaacttggcgacaggtgag
aaggttgaagttggggaagcagttggtattattgcggctcaatcaatcggtgaaccaggt
acacagttaacaatgcgtacattccatacaggtggggttgccggtgatgatattacacaa
ggtcttccacgtatccaagagatctttgaagcacgtaatccaaaaggtcaatctgttatt
tcagaaattgctggtacggtttcagatatcacagaaattcgtgaaggcttaaaagaaatt
acaattcaaggtgacgtagaaactcgtaagtatcaagcaccttataacgcacgtttgaaa
gttatcgaaggtgataatgtagaacgtggtcaagttttaacagaaggttctatcgatcca
aaacaattgctaaaagtcaaagacgtttcaactgttcaagaatatttattaaaagaagtt
caaaaagtataccgtatgcaaggggtagaaattggggataaacacattgaggtaatggtt
cgccaaatgcttcgtaaagtgcgtgtaattgaagctggagatacagaattactacctggc
tcattactagatatccaccaattctcagaggcaaacgtagacgctgttatgaatggcaaa
aaccctgcaacttgtcgccctgttatccttggtattacaaaagcttctcttgaaacagaa
tcattcttatctgcagcatcgttccaagaaacaacacgtgtgttaacagatgcagcaatt
aagggtaaacgtgacgaacttcttggattaaaagagaacgtaattatcggtaaacttgtt
cctgcaggtactggtatgcaacgttatcgtcaaatccgcatcgaaaaagatgagcttgac
acagaagtcgtttctgctgaataa
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