Lysobacter sp. TY2-98: DWG18_01405
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Entry
DWG18_01405 CDS
T05586
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
lyt
Lysobacter sp. TY2-98
Brite
KEGG Orthology (KO) [BR:
lyt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lyt03019
]
DWG18_01405 (hrpA)
Enzymes [BR:
lyt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
DWG18_01405 (hrpA)
Messenger RNA biogenesis [BR:
lyt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
DWG18_01405 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
Helicase_C
OB_NTP_bind
HA2_C
HA2_N
DEAD
AAA_19
AAA_22
AAA_23
nSTAND3
Cas3-like_C_2
SRP54
AAA_25
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AXK73497
UniProt:
A0A345ZP22
LinkDB
All DBs
Position
282957..287060
Genome browser
AA seq
1367 aa
AA seq
DB search
MTRDRGRLHGLWMRWNQSPGDIARRDAFERALAASVAQREARARNLPTATVDAALPIAAE
AERIVDLIREHPVVVIAGETGSGKTTQIPKLCIAAGRGVAGMIGCTQPRRIAARAVARRV
AEELKVPMGGAVGYQVRFTDNVGEDTVVKFMTDGILLAEIQSDRWLSRYDTLLIDEAHER
SLNIDFLLGYLKQLLQRRKDLKVIITSATIDTARFAAHFQNAPVVSVEGRGYPVSVRYRP
LEGESDATSRTRRAPLADESSRDGARTVNEAIVAACDEISSEDARGDVLIFLPGEREIRD
AHQALERRKYRHTEVLPLYARLSARDQDRVFNPGPQRRIVLATNVAETSLTVPRIRYVVD
PGLARVKRYSPRAKLDRLHIEPVSQASANQRMGRCGRVSEGTCYRLYAEADFQSRPEFTD
PEIRRAALAGVILRMLALGLGRIEDFPFLEPPDPRAIADGWQQLAELGAVDVDRKLTEIG
RLMARMPVDVKLARMLVAANAHGVLRELLVIAAFLGIQDPRERPSDQRAAADNAHAEFAD
TRSEFVGILKLWDAYETAHADLTQSKLRAWCEKHFLGFLRMREWRELHRQLKLMAEELGW
SAGRADAPVTSAGLASPRAANRDKAARPTRSHGGLPVAARSQPTSAPAAAAAAVGASSSP
ASGDAEMAADSGKAAAHHFTKLHRAILAGLPTQVGQRTDRGYDGPRGRKFQLFPGSSLAK
KPPPWVLSATLLDTERVWALTNASIEPQWAIDELPHLLARRQSDPRWSRSQGRVIGSEQI
SLFGLVLAPKRPIHYGALFPEESRVIFARDALVTGEINTRSVFLKKNLATYQKAKEEEAK
QRRAGLVVDEEWMAQWYLDRLPAHVHNAQALDAWYAKLPANEKAALEWSLDDLMIGEATT
ASRFPPFLRMGDVQLAVKYRFEPGADDDGMTIAVPLHLLNALDAPQLSWLAPGFVADKAA
ALIRSLPKAQRRNFVPAPDFAKAFAEAHGAWANGRPTEPDDITGTLARFLSKLTGVQVMA
MEFDAASIKAHLRTNLRLLDRDGRRVLAESRDLDDLRDRFGALAADAFAEKASSGLAQDG
LATFPATRIPDSVRGAGGIPAFPALQDDGATASLHVFAQRVEAERAHPAGVRRLLRLAFV
DRMRQARKQLPVSPKTALLYAAIESAAPRTGEAATLKEGDRLRLDLVEGAFDALTDDGLG
AIRDPDAFDARREQVAKRLFAEATDRLRQAEAILTAVADVRARLEAPLMGWASGNLDDMR
AHLASLTPPGFLRDTPAALLREYPRYLKALSLRAERALRDPARDQARMLELRPFVQALEA
ANADDLAWQEFRQDLEELRVSLFAQELGARGGVSPKKLAQRLAQLAR
NT seq
4104 nt
NT seq
+upstream
nt +downstream
nt
atgacgcgtgatcgcggccgtctgcacggcctctggatgcgctggaaccagtcacctggc
gacatcgcccgtcgcgatgccttcgagcgtgcgctcgcggcgtcggtagcgcaacgcgag
gcccgcgcgcgcaacctgccgaccgcgaccgtcgacgcggcattgccgatcgcggcggag
gccgagcgcattgtcgacctgatccgtgaacacccggtcgtggtgatcgctggcgagacc
ggttcgggtaagaccacgcagatcccgaagctctgcatcgcggccgggcgtggcgtcgcc
ggcatgatcggttgtacgcagccgcgccggatcgccgcacgcgcagtggcgcgtcgcgtt
gccgaagaactgaaggtgccgatgggtggcgcggtcggctaccaggtgcgcttcaccgac
aacgtcggcgaggacaccgtggtcaagttcatgaccgacggcatcctgctcgcggaaatc
cagtccgaccgctggctgtcgcgctacgacacgctgctcatcgacgaagcgcacgagcgc
tcgctcaacatcgatttcctgctcggttatctgaagcagctgctgcagcgtcggaaagac
ctcaaggtcatcatcacctccgcgacgatcgataccgcacgcttcgccgcgcatttccag
aatgcgcccgtggtgagcgtcgaaggacgcggctatccggtgtcggttcgctatcgccca
ctcgaaggcgagtccgacgccacgtcgcggacgcggcgcgcgccgttggcggacgagtcc
tcgcgcgatggcgcgcgcaccgtcaacgaagccatcgtcgcggcctgcgacgaaatcagc
tccgaggatgcacgcggcgacgtgctgatcttccttccgggcgagcgtgagatccgggac
gcgcaccaggcgctggagcgtcgcaagtaccgccacaccgaagtgctgccgctgtatgcg
cgtctgagtgcgcgcgaccaggatcgcgtctttaatcccggcccgcagcgccgcatcgtg
ctcgcgaccaacgtcgccgagacgtcgctgacggtgccgcgcatccgctacgtcgtcgat
cccggcttggcgcgcgtcaagcgctacagcccgcgcgccaagctcgaccgcctgcacatc
gagccggtcagtcaggccagtgcgaaccagcgcatgggtcgatgcggccgcgtctcggaa
ggcacctgctatcgcctgtatgccgaggccgatttccagtcgcgcccggagttcaccgac
cccgaaatccgtcgcgccgcacttgcgggcgtgatcctgcgcatgctcgcgctcggcctc
gggcgcatcgaggatttcccgttcctcgaaccgccggacccgcgcgcgatcgcggatggc
tggcaacagctcgccgagctcggtgcggtcgacgtcgatcgcaagctgaccgagatcggt
cgtctgatggcgcgcatgccggtcgacgtcaagctggcgcgcatgctcgtcgccgccaac
gcgcacggcgtgctgcgcgagttgctggtgatcgccgcgttcctcggtatccaggatccg
cgcgagcgtccgtcggaccagcgcgccgccgcggacaacgcgcatgccgaattcgccgac
acgcgttcggagttcgtcggcatcctcaagctgtgggacgcgtacgagacggcgcatgcc
gacctcacccagtccaagctgcgcgcgtggtgcgagaagcacttcctcggctttctgcgc
atgcgcgaatggcgtgagctgcaccgtcagctgaagctgatggcggaggaactgggctgg
tcggcgggccgtgccgatgcgccggtgacgagtgcggggctcgcgtcgccgcgtgcagcg
aatcgtgacaaggcggcgcggccgacgcgcagccacggggggttgcccgtcgccgcgcga
agccagccaacttccgcgcccgcagcggcagcggcagcggtcggcgcctcctcgtcacca
gcgagcggcgacgcggagatggcggccgacagcggcaaagcggccgcacatcacttcacc
aagttgcaccgcgcaatcctcgccggtctgccgacgcaagtcggccagcgcaccgatcgc
ggctacgacggcccacgcggtcgcaaattccagctgtttcccgggtcgtcgctggcgaaa
aaaccgccgccgtgggtactgtccgccacgctgctcgacaccgagcgcgtgtgggcgctg
acgaacgcgtcgatcgagccgcaatgggccatcgacgaactgccgcacctgcttgcgcgc
cggcagagcgatccgcgctggtcgcgctcgcaggggcgcgtcatcggcagcgaacagatc
tcgctgttcggtctcgtgctcgcgccgaaacgaccgatccactacggcgcgctgttcccc
gaggagagccgggtgatcttcgcgcgcgatgcgctggtcaccggcgagatcaatacacgt
tcggtgttcctgaagaagaacctcgcgacgtaccagaaggccaaggaggaggaagcgaaa
caacgtcgcgccggcctggtcgtcgacgaggaatggatggcacagtggtacctcgatcgg
cttcccgcacacgtgcacaacgcgcaggcgctggacgcgtggtacgcgaagctgccggcg
aacgagaaggccgcgctggagtggtcgctcgatgacctgatgatcggcgaggcgaccacc
gcgtcgcgcttcccgccgttcctgcgcatgggcgacgtgcagctcgcggtgaagtaccgc
ttcgagccgggcgcggacgatgacggcatgacgatcgcggtgccgctgcacctgctcaac
gcactcgatgcaccgcagctgtcgtggcttgcgccgggcttcgtcgccgacaaggccgcc
gcgctcattcgctcgctgccgaaagcgcagcggcgcaacttcgtgcctgcaccggatttc
gccaaggcgttcgcggaggcgcacggcgcgtgggcgaacggccgtcccaccgaacccgac
gacatcaccggaacgctcgcgcgtttcctgtcgaaactcactggcgtgcaggtgatggcg
atggagttcgacgcggcgtcgatcaaggcacatctgcggacgaacctgcgcctgctcgat
cgtgacggccggcgcgtgctcgcggagtcgcgcgatctcgacgatctgcgcgatcgcttc
ggcgcgctcgccgcggacgcgttcgcggagaaggcgtccagcggcctcgcgcaggacggg
ctggcgaccttcccggccacgcgcattcccgacagcgtgcggggcgccggcggcattccc
gcgttccccgcattgcaggacgacggcgcgaccgcgtcgttgcacgtgttcgcccagcgc
gtcgaagccgagcgcgcgcatcccgctggcgtgcgccgcctgctgcgcctcgccttcgtc
gatcgcatgcgtcaggcgcgcaagcagttgccggtatcgccgaagaccgcgctgctgtac
gcggcgatcgagtcggcggcaccgcgcaccggcgaagcggccacgctcaaggaaggcgac
agactgcgtctcgatctcgtggaaggtgcattcgacgcgttgacggacgacggactcggc
gcgatccgcgatcccgatgcgttcgatgcgcgccgcgagcaggtcgccaagcgcctgttc
gccgaagcaaccgaccgcctgcgtcaggccgaggcgattctcaccgcggtggccgatgtg
cgcgccaggctcgaggcaccgctgatgggctgggccagcggcaatctcgacgacatgcgc
gcgcatctcgcctcgctgacgccgcccggcttcctgcgtgacacgcccgcggcgctactg
cgcgaatacccgcgctatctcaaggcgctctcactgcgtgccgagcgtgcgctgcgcgat
cccgcacgcgaccaggcgcgcatgctcgagcttcgaccgttcgttcaggcgctcgaagcg
gcgaatgccgacgacctcgcatggcaggagttccgccaggacctcgaggaactgcgcgtc
tcgctgttcgcgcaggaactcggtgcgcgtggcggggtgtcgcccaagaagctcgcgcaa
cggctggcgcagttggcgcgctga
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