Lysobacter sp. TY2-98: DWG18_04900
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Entry
DWG18_04900 CDS
T05586
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
lyt
Lysobacter sp. TY2-98
Pathway
lyt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lyt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DWG18_04900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lyt03019
]
DWG18_04900
03009 Ribosome biogenesis [BR:
lyt03009
]
DWG18_04900
Enzymes [BR:
lyt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
DWG18_04900
Messenger RNA biogenesis [BR:
lyt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DWG18_04900
Ribosome biogenesis [BR:
lyt03009
]
Prokaryotic type
rRNA processing factors
DWG18_04900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
zf-C2H2_FBX41
Motif
Other DBs
NCBI-ProteinID:
AXK71694
UniProt:
A0A345ZIW9
LinkDB
All DBs
Position
complement(1028068..1031292)
Genome browser
AA seq
1074 aa
AA seq
DB search
MKRMLINATQAEELRVAIVDGQNLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVEY
GAERHGFLPLKEISRDYFQAGVDPNKAGLKELLKEGQEVVVQVDKEERGNKGAALTTFIS
LAGRYMVLMPNSPTAGGVSRRIEGEDRAELKKAMDALTIPDDMGVIIRTAGVGRDAEELQ
WDLDYLLQIWRAVCEAALSKPAPFLIYQESRLIIRALRDYMRPDIGEVLVDTPEMYAEAR
DFVQQVMPHNVRKLKHYTDDVPLFNRYQIESQIENAYERTVKLPSGGALVIDQTEALTAI
DVNSARATKGGDIEETAFNTNLEAAEEVARQMRLRDLGGLVVIDFIDMSSTKHQREVENR
LSNALRHDRARVQIGRISRFGLLEMSRQRLRPSLGESSQIVCPRCEGHGRMRSVESLSLS
VLRLAEEHAMKDNTGQVLVQAPVEIANFLLNEKRRALAEIEQRHDAPIVIVADDQLETPH
FEVTRLRENELGEEASKPSYQRGTPRKLPTHALTKANLNVPPPPAVTNVKPVTPAPLREP
KEQAPAPVAAAPVAPTPTPTHSVGLVERMLRFFRGQTPVAPPPAPAPSRDSRGDQGRRDR
SERNDRNDRSRRNEQRRDERQNGRPPQQGQQQNANKGGQPQQPGKNRQQNERGGQPPQQQ
KQQQQPQPQQQSRPPRPERENAQQAEANAQREPKPQRPQQQAQPQPQSQSQAEPTAKPVV
AVPVSAAETLPTNELTAMPVVTEAVDAAAVAAEQIEGGDAAKAENGARRRRGRRGGRRRR
RGGAEGAEGMDSMDSLDGDLQDGDDAGDDETVDTAVDAAPAPNRAQPEFEFDDIPSTPRA
PETKPTAVVAPVAMAAAALTADAAERAEVPVSAPSANATREVIAPISTTGSVVIAEPAIA
ETPQADRVMSSSIEGTTSAPPAVAQPLVSAPSPAVETASADAAAPVAVSTPATFAKADDA
IATPTTEQIETVEAATPIAAAIENSPDTSTNAVALEPGAESINDAGDAIETPFLADTTST
NEMVVDTGASEDIEHGSAGAPVSRDVASINALPGGVDAAPSQGDLLGNDDPRHS
NT seq
3225 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgaatgctcatcaacgcgacgcaggcggaagaactgcgcgtcgcgatcgtcgac
ggccagaatctgtacgacatcgacatcgaacagccgtcgaaggaacagaagaagtcgaac
atctacaagggccgcatcacccgtctcgagccctcgctcgaagcggccttcgtcgaatac
ggcgccgagcgccacgggttcctcccgctcaaggaaatctcacgcgactacttccaggca
ggcgtcgatccgaacaaggccggtctgaaggagcttctgaaggaaggccaggaagtcgtc
gtccaggtcgacaaggaagaacgcggcaacaagggcgcggcgctgacgacgttcatttcg
ctcgccggccgctacatggtgctgatgcccaactcgccgacggcgggcggcgtgtcgcgt
cgcatcgagggcgaggaccgcgccgagctgaagaaggccatggacgcgctgacgatcccg
gacgacatgggcgtcatcatccgcaccgccggcgtcggccgcgatgccgaagagctgcag
tgggacctcgactacctgctgcagatctggcgcgccgtctgcgaagccgcgctgtccaag
ccggcaccgttcctgatctaccaggaatcgcgcctgatcatccgcgcgctgcgcgactac
atgcgcccggacatcggcgaagtgctggtcgacacgccggagatgtacgccgaagcgcgc
gacttcgtgcagcaggtgatgccgcacaacgtccgcaagctcaagcactacaccgacgac
gttccgctcttcaaccgctaccagatcgagtcgcagattgagaacgcctacgagcgcacg
gtgaagctgccgtcgggtggcgcactggtcatcgaccagaccgaagcgctgaccgcgatc
gacgtgaactcggcgcgcgccaccaagggcggcgacatcgaggaaacggcgttcaatacc
aacctcgaagcagccgaggaagtcgcgcggcagatgcgcctgcgcgatctcggcggcctt
gtggtcatcgacttcatcgatatgtcgtcgaccaagcaccagcgcgaggtcgagaaccgg
ctgtcgaacgcgctgcgtcatgaccgcgcgcgcgttcagatcggccgcatttcgcgtttc
ggcctgctcgagatgtcgcgccagcgcctgcgcccgtcgctgggcgagtcgagccagatc
gtctgcccgcgttgcgaaggccacggacgtatgcgcagcgtcgagtcactgtcgctgtcg
gtgctgcgtctggccgaagagcacgcgatgaaggacaacaccggacaggtgctggtgcag
gccccggtcgagatcgcgaacttcctcctcaacgagaagcgccgcgcgctggccgagatc
gaacagcgccacgatgcgccgatcgtcatcgtcgccgacgaccagctggagacgccgcac
ttcgaagtcacgcgtttgcgcgagaacgaactcggcgaggaagcgagcaagccgagctac
cagcgcggcacgccgcgcaagctgccgacgcacgcgctgaccaaggccaacctcaacgtg
ccgccgccgcccgcggtgaccaacgtcaagccggtgacgcccgcaccgctgcgcgagccg
aaggagcaggcgcctgcgcccgtggccgcggctccggtcgcaccgacgcccacgccgacg
cattcggtcggcctggtcgaacgcatgctgcgtttcttccgcggccagacgccggtcgcc
ccgccgccggcgcccgcgccgtcgcgtgattcgcgtggcgatcagggccgtcgcgatcgc
agcgaacgaaacgatcgcaatgaccgcagccgtcgcaacgagcagcgtcgcgatgagcgc
cagaacgggcgcccgccgcagcaaggccagcagcagaacgcgaacaagggcggtcagccg
cagcagccgggcaagaaccgacagcagaacgagcgtggtggccagccgccgcaacagcag
aagcagcaacagcaaccgcagccgcagcagcagagccgtccgccgcgtcccgagcgggag
aacgcgcagcaggctgaagcgaacgcgcagcgcgagccgaagccgcagcgtccgcagcaa
caggcgcagccgcagccgcagtcgcagtcgcaggctgagccgacggcgaaaccggtggtc
gcggtgcctgtcagtgccgcggaaacgctgccgacgaacgagctgaccgcgatgcccgtg
gtgaccgaagcggtcgatgcagccgcggtcgccgcggagcagatcgagggcggcgatgcg
gcgaaggccgagaacggcgcgcgtcgccgtcgcggccgccgcggtggtcgtcgtcgtcgt
cgcggcggtgccgaaggcgccgagggcatggattcgatggattcgctggatggcgatctg
caggacggcgacgacgccggtgacgacgagaccgtcgacaccgcggtcgacgctgcgccg
gctccgaaccgcgcccagccggagttcgagttcgacgacatcccgtccacgccgcgtgcg
cccgaaaccaagccgaccgccgtcgttgcgcccgtcgcgatggccgctgcggcgctcacc
gccgacgcagccgagcgcgcggaagttccggtgtcggcaccgtctgcgaacgccacgcgc
gaagtgattgcacccatcagcaccacgggctcggtcgtcatcgcggaacccgccatcgcc
gaaacgccgcaggccgatcgcgtcatgagctcgtcgatcgaaggcacgacgtcggcaccg
ccggcggttgcgcagccgctcgtgtcagcgccctcgcccgcagtggagaccgcgtcggcc
gacgccgccgcgcctgtggctgtgtcgacgcccgcaacgttcgcgaaggccgacgatgcg
atcgccacgccgacgaccgagcagatcgagaccgtcgaagccgcgacgcccattgccgcg
gcgatcgaaaacagccccgacacctcgacgaacgctgtcgcgctcgagccgggtgccgag
tcgatcaacgacgcgggcgatgcgatcgagacgccgttcctggccgacaccacgtcgacc
aatgaaatggtcgtcgacaccggcgcgtccgaagacatcgagcacggcagcgccggtgcg
ccggtgtcgcgcgatgtcgcgagtatcaacgcgctgccgggcggtgtggacgccgcgccg
tcgcagggcgacctgctcggcaatgacgatccgcgccacagctga
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