Lysobacter sp. TY2-98: DWG18_06095
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Entry
DWG18_06095 CDS
T05586
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
lyt
Lysobacter sp. TY2-98
Pathway
lyt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lyt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DWG18_06095 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lyt03019
]
DWG18_06095 (pnp)
03016 Transfer RNA biogenesis [BR:
lyt03016
]
DWG18_06095 (pnp)
Enzymes [BR:
lyt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
DWG18_06095 (pnp)
Messenger RNA biogenesis [BR:
lyt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
DWG18_06095 (pnp)
Transfer RNA biogenesis [BR:
lyt03016
]
Prokaryotic type
tRNA degradation factors
DWG18_06095 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
S1_RRP5
OB_RRP5_4th
KH_2
KH-I_KHDC4-BBP
S1_2
KH_KhpA-B
KH_PNO1_2nd
Motif
Other DBs
NCBI-ProteinID:
AXK71899
LinkDB
All DBs
Position
complement(1307314..1309422)
Genome browser
AA seq
702 aa
AA seq
DB search
MAKITKTFQYGAHQVTLETGEIARQAGGAVIVKMDDTVVLVAAVAAKTAREGQDFFPLTV
DYQEKFYAGGRIPGGFFKREGRATEKETLTSRLIDRPIRPLFPEEFKNEVQIIATVVSLN
PEIDGDIPALLGASAALALTGAPFQGPIGAAKVGYINGQYVLNPTASQLKESQLELVVAG
TKDAVLMVESEADVLSEDVMLGAVMFGHQAQQVAINAINELVAEAGTQSWNWEAPAKNES
MIDALRNAIGDRLGAAYQVVNKAERRTSIQTLKKAALEMLQPHTEANGWNPADLSKEFGE
QEYQTMRQSVLRTRKRIDGRDLTTVRAIDSKIGVLPRTHGSALFTRGETQALVVATLGTA
RDGQIIDAVSGEYKEHFLFHYNFPPYSVGETGRMMGPKRREIGHGRLAKRGILAVMPTME
EFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPIKAPVAGIAMGLIKEGDDFAVLS
DILGDEDHLGDMDFKVAGTSEGITALQMDIKIQGITEEIMKVALAQAKQGRLHILGEMAK
AITTARTELSEYAPRLLTMKIHPDKIREVIGKGGATIQSITKETGTQIDIQDDGTIVIAS
VNAAAAQAAKARIDQIVSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISNERV
EKVSDKLKEGDVVKVKVLEVDKQGRIRLSMKAVEEGEGTPAA
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
gtggcgaaaattaccaagaccttccagtacggcgcccatcaggtcacgctcgagactggc
gaaattgcccgccaggcgggcggcgccgtcatcgtgaagatggacgacaccgtggtgctc
gttgcggccgttgcggccaagacggcacgtgaaggccaggacttcttcccgctcaccgtc
gactaccaggaaaagttctacgccggtggccgcatcccgggcggcttcttcaagcgcgaa
ggccgcgcgacggagaaggaaacgctgacgtcgcgactgatcgatcgtccgatccgtccg
ctcttcccggaagagttcaagaacgaagtccagatcatcgccacggtggtctcgctcaat
ccggaaatcgacggcgacatcccggcgctgctgggcgcgtccgccgcgctcgcgcttacc
ggcgcgcccttccagggcccgatcggcgcggccaaggtcggctacatcaacggtcagtac
gtgctgaacccgacggcgtcgcagctgaaggaatcgcagctcgagctcgtcgtcgccggc
accaaggacgccgtgctgatggtcgagtccgaagctgacgtgctgtcggaagacgtgatg
ctcggcgccgtgatgttcggtcaccaggcgcagcaggttgcgatcaacgcgattaacgag
ctcgtcgccgaagccggcacgcagtcgtggaactgggaagcgccggccaagaacgagtcg
atgatcgatgcgctgcgcaacgcgatcggtgatcgcctcggcgccgcataccaggtcgtc
aacaaggccgagcgtcgcacgtcgatccagacgctgaagaaggccgcgctcgagatgctg
cagccgcataccgaggccaacggctggaacccggccgacctgtccaaggaatttggcgag
caggaataccagacgatgcgtcagtcggtgctccgcacccgcaagcgcatcgacgggcgt
gatctgacgacggttcgcgcgatcgacagcaagatcggcgtgctgccgcgtacccacggc
tcggcgctcttcacgcgcggcgagacgcaggcgctcgtggtcgcgacgctcggcaccgcg
cgtgatggccagatcatcgacgccgtctcgggcgagtacaaggaacacttcctgttccac
tacaacttcccgccgtactcggtgggcgagaccggccgcatgatgggcccgaagcgtcgc
gagatcggccacggtcgcctcgccaagcgcggcatcctcgccgtgatgccgacgatggaa
gagttcccgtacacgatccgcgtcgtgtccgagatcaccgagtcgaacggttcgtcgtcg
atggcgtcggtctgcggttcgtcgctggccctgatggacgcgggcgtgccgatcaaggcg
ccggtcgcgggcatcgcgatgggcctgatcaaggaaggcgacgatttcgccgtcctgtcc
gacatcctcggtgacgaggatcacctcggcgacatggacttcaaggtcgccggtacgtcg
gaaggcatcaccgccctgcagatggacatcaagatccagggcatcaccgaagagatcatg
aaggtcgcgctcgcccaggcgaagcagggccgtctgcacatcctcggcgagatggcgaag
gcgatcaccaccgcgcgcacggagctttccgagtacgcgccgcgcctgctcaccatgaag
atccacccggacaagatccgcgaagtgatcggcaagggtggcgcgacgatccagtcgatc
accaaggaaaccggcacgcagatcgacatccaggacgacggcaccatcgtcatcgcttcg
gtcaacgccgctgccgcgcaggccgcgaaggcgcgcatcgaccagatcgtctcggacgtc
gagccgggccgcatctacgaaggcaaggtcgccaagatcatggacttcggcgcgttcgtc
acgatcctgccgggcaaggacggcctcgtgcacgtgtcgcagatctccaatgagcgcgtc
gagaaggtctcggacaagctgaaggaaggcgacgtggtgaaggtcaaggtgctggaagtc
gacaagcagggccgcatccgcctgtcgatgaaggccgtcgaggaaggcgagggcacgccg
gcggcgtaa
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