Lysobacter sp. TY2-98: DWG18_07065
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Entry
DWG18_07065 CDS
T05586
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lyt
Lysobacter sp. TY2-98
Pathway
lyt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lyt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DWG18_07065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lyt03019
]
DWG18_07065
03009 Ribosome biogenesis [BR:
lyt03009
]
DWG18_07065
Enzymes [BR:
lyt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DWG18_07065
Messenger RNA biogenesis [BR:
lyt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DWG18_07065
Ribosome biogenesis [BR:
lyt03009
]
Prokaryotic type
rRNA helicases
DWG18_07065
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
P-loop_SecA
Cas3-like_C_2
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AXK72065
LinkDB
All DBs
Position
1498837..1501014
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AA seq
725 aa
AA seq
DB search
MSAETDPSSVTFTDLALGAPLLRALADVGYETPSPIQAATIPPLLAGRDVIGQAQTGTGK
TAAFALPVLARIDPAKTKPQALVLAPTRELAIQVAEAFQKYATYLPNFHVLPIYGGQGYG
PQLAALRRGVHVIVGTPGRVIDHMKRGTLDLSALSMVVLDEADEMLRMGFIDDVEAVMKA
TPETRQVALFSATMPAPIRRIAQTYLKDPTEIAIKATTTTAANIRQRYVAVSQHHKIDAI
TRVLEAETFDAMIVFARTKIATEELAGKLAARGIAAAALNGDVQQAQREKIVQQLKDGRI
DVLVATDVAARGLDVDRITHVLNYDIPYDTESYVHRIGRTGRAGRTGEAILFVTPRERGM
LRAIERATRQPIEQMEPPSIESVNARRVDKFMERISDALESAELPTYRDLIERFENERNV
PAVEIAAALAHLLQGESPLLMATGHDPLLDAQRRDRMDRERHQDRDRGPRPDRPGRFERD
SRGERPARFDRDDRAPRPDRDGKPYPDRSERPARFERDDRPRPEQGGDRAYGRAPRPERD
DQAPRIERGPMGDERPQRFEREDSRPRPEQVERPARSGSDFESRGPRFEHDSRPRNDAER
AFDDAPRRERPQRGPEAGMETFRVEVGHVHGVKPGNLVGAIANEADLESRFIGRIDIRDH
FTLIDLPEGMPRETMEHLKRVRVAGQQLKLRRDDGAPPREGDRGDRGDRGGRGDRGGFRG
PRRDR
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atgagcgccgaaaccgacccgtcctccgtcaccttcaccgaccttgccctcggcgcgccg
ctgctgcgcgcgctggccgacgtcggctacgaaaccccctcgccgatccaggccgccacc
atcccgccgctgctcgccggccgcgacgtcatcggccaggcgcagaccggtaccggcaag
accgccgcgttcgcattgccggtgctggcccgcatcgatcccgccaagaccaagccgcag
gccctggtgctggcaccgacccgcgaactcgccatccaggtggccgaggcgttccagaag
tacgcgacctacctgcccaacttccacgtgctgccgatctacggtgggcagggttacggg
ccgcagctggcggcgctgcgccgtggcgtgcacgtcatcgtcggtacgcccggccgcgtg
atcgaccacatgaagcgcggcacgctcgatctgtccgcgctgtcgatggtcgtgctcgac
gaggccgacgagatgctgcgcatgggcttcatcgacgacgtcgaagcagtgatgaaggcg
acgccggagacgcgtcaggtcgcactgttctcggccaccatgccggcgccgatccgccgc
atcgcgcagacctacctgaaggatccgaccgaaatcgccatcaaggcgacgacgacgacc
gcggcgaacatccgccagcgctacgtcgccgtcagccagcaccacaagatcgacgcgatc
acgcgtgtgctcgaagccgagacgttcgacgcgatgatcgtgttcgcgcgcaccaagatc
gcgacggaggagctcgccggaaagctcgccgcgcgcggcatcgcggcggcggctttgaat
ggcgatgtccagcaggcgcagcgcgagaagatcgtgcagcagctcaaggacggccgcatc
gacgtgctggtcgccaccgacgtggcggctcgcggtctggacgtcgaccgcatcacgcac
gtcctcaattacgacatcccgtacgacaccgagagctacgtgcaccgcatcggccgtacc
ggccgcgcgggccgcaccggtgaagcgatcctgttcgtgacgccgcgcgagcgcggcatg
ctgcgcgcgatcgaacgtgccacgcgccagccgatcgagcagatggagccgccgagcatc
gagtcggtgaatgcgcgtcgcgtcgacaagttcatggagcgcatttccgatgcgctggaa
tccgccgagctgccgacctaccgcgatctcatcgagcgcttcgagaacgagcgcaacgtg
ccggcggtggaaatcgccgccgccctcgcgcacctgctgcagggcgagtcgccgctgctg
atggcgaccggccacgatccgctgctcgacgcccagcgtcgcgaccgcatggatcgcgag
cgccatcaggatcgcgatcgcggtccgcgtccggatcgtccgggccgtttcgaacgcgac
agccgcggcgagcgcccggcacgtttcgaccgcgacgatcgcgcgccgcgcccggaccgc
gacggcaagccgtatccggatcgcagcgaacgccctgcccgcttcgagcgcgatgatcgt
ccgcgccccgaacagggcggtgatcgtgcctacggtcgcgcgccgcgccccgaacgcgac
gaccaggcgccgcgcatcgaacgcggtccgatgggcgacgagcgcccgcaacgcttcgag
cgcgaggacagtcgtccgcgtcccgagcaggtggagcgtcccgcacgcagcgggagcgat
ttcgagtcgcgtggaccgcgcttcgagcatgattcgcgtccgcgcaacgatgcggagcgc
gcgttcgacgatgcaccacgtcgcgagcgtccgcagcgtggccccgaggcgggcatggaa
acgttccgcgtcgaagtcgggcacgtgcacggcgtgaagccgggcaatctcgtcggcgcg
atcgcgaacgaagcggatctcgaaagccgctttatcggccgcatcgacatccgcgaccac
ttcacgctcatcgacctgccggaaggcatgccgcgcgaaacaatggaacacctcaagcgc
gtgcgcgtcgccgggcagcaactcaagctgcgtcgcgacgatggcgcgccaccgcgcgag
ggcgatcggggcgaccgcggggaccggggtgggcggggcgatcgcggcggcttccgcggc
ccgcgtcgcgatcgctga
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