Lysobacter sp. TY2-98: DWG18_08795
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Entry
DWG18_08795 CDS
T05586
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lyt
Lysobacter sp. TY2-98
Pathway
lyt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lyt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DWG18_08795
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lyt03400
]
DWG18_08795
Enzymes [BR:
lyt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DWG18_08795
DNA repair and recombination proteins [BR:
lyt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DWG18_08795
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
Cas3-like_C_2
RecG_dom3_C
AAA_30
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AXK72360
UniProt:
A0A345ZKT5
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All DBs
Position
1835735..1839235
Genome browser
AA seq
1166 aa
AA seq
DB search
MPAPLLPIPPLPKAGQQRAWWRAPASSSALAFHIAAAATSHDGPLLAITRDNQTAHQLEG
DLRTLLGARSGVDGDIPVLAFPDWETLPYDAFSPHPDIVSQRLATLHRLPQLTRGVVVLP
VQTLMQRLAPPKHVVGGSFDVRVGQRLDLDAEKRRLEAAGYRHVPQVLDPGDFAVRGGLL
DVYPMGADQPFRVEMLDDEIDTIRVFDPESQRSLEKMERIHLLPGRELPLDDAALKSALE
RLRDRFDVDTRRSALYQDLKSGLAPAGVEYYLPLFFDDTATLFDYMVDGVLPIVTEGSFE
AADQFWSQTGERYEQRRHDVERPVLPPAELYLAPDALRGIFNETSRVEVCGANHAQLDRA
QPLGDQPAMPLPLAPRDPAASDSLKSFVTAYPGDMLIAADSAGRREALIELLEAVELTAT
VLSDWTTFYERGPAARSAASGKLFAIAVAPLDDGFSISTPTFTVLTERQLFPERASQPRR
RKRVGREPEAIIRDLGELTEGAPIVHEDHGVGRYRGLVTLDVGGTPGEFLDIEYAKGDRL
YVPVAQLHLINRYSGASEETAPLHSLGGEQWQKAKKKAAEKVRDVAAELLEIQAKRQARA
GLAIDVDRTMYEPFAATFPFEETPDQAAAISAVVRDLQSSQPMDRVVCGDVGFGKTEVAV
RAAFTAAAGGKQVALLVPTTLLAEQHYRNFRDRFADWPIRVEVLSRFKSKKEIAAELEKV
TEGTIDVIVGTHRLLQPDVKFKDLGLVIVDEEQRFGVRQKEALKALRANVHLLTLTATPI
PRTLNMAMAGLRDLSIIATPPAHRLAVQTFVVPWDDAQLREAFQRELSRGGQVYFLHNDV
ESIGRMQRQLQELVPDARIGVAHGQMPERELERVMLDFHKQRFNVLLSTTIIESGIDIPN
ANTIIINRADKFGLAQLHQLRGRVGRSHHRAYAYLVIPDRKAITADARKRLDAIEAMDEL
GAGFTLATHDLEIRGAGELLGEEQSGQMAEVGFSLYTELLERAVRSIRQGKLPDVDMVEA
RGADVELHVPALIPDDYLPDVHTRLTLYKRISSARNADELRELQVEMIDRFGLLPDAAKN
LFTVAELKLEATRLGIRKLELGEKTGRVQFVEKPNVDPMAVIKLIQGQPKLYRMDGPDKL
KLSLDLPEAAQRVAAARGLLITLAAR
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgcccgccccccttctccccattccgccgctgcccaaggccggccagcagcgcgcctgg
tggcgcgcgccggcttcgtcgtcggcgctcgccttccacatcgccgccgcggccacgtcg
cacgacggcccgctgctcgcgatcacccgcgacaaccagaccgcgcaccagctcgaaggc
gacctgcgcaccttgctcggcgcgcgcagcggcgtcgatggcgacattccggtgctcgcg
tttcccgactgggagacgctgccctacgacgccttcagcccccatcccgacatcgtcagc
cagcgcctggcgacgctgcatcgcctgccgcagctcacgcgcggcgtggtggtgctgccg
gtgcagacgctcatgcagcgcctggcgccgccgaagcatgtcgtcggcggcagtttcgat
gtgcgcgtcggccagcgactcgatctcgatgccgagaagcggcgcctcgaagctgcaggc
taccgccacgtcccgcaggtgctcgatcccggcgacttcgcggtacgtggtggcctgctc
gacgtgtatccgatgggcgcggaccagcccttccgcgtcgaaatgctcgacgacgagatc
gacaccatccgcgtgttcgatccggaatcgcagcgttcgctggaaaagatggaacggatc
catctgttgcccggccgcgaactgccgctggacgacgctgccctcaagagtgcgctcgaa
cgcctgcgcgatcgcttcgacgtcgacacgcgccgcagcgcgctctaccaggatctgaaa
tccggcctcgcaccggccggtgtcgagtactacctgccgctgttcttcgacgacacggcc
acgctgttcgactacatggtcgacggcgtgctgcccatcgtcaccgagggcagtttcgaa
gccgccgaccagttctggtcgcagaccggcgagcgctacgagcagcgccgccacgacgtc
gaacgccccgtgctgccgccggccgagctctacctcgcgccggacgcattgcgcggcatt
ttcaacgagacctcgcgcgtcgaagtctgcggcgcgaaccatgcgcaactcgatcgcgcc
caaccgctcggcgatcagcccgcgatgccgctgccgctcgcgccgcgcgaccccgccgcc
agcgattccctgaagtcgttcgtcactgcatatccgggcgacatgctgatcgcggcggat
tccgcgggccgacgcgaggcgctgatcgagctgctcgaagcggtcgagctcacagcgacc
gtgctgagtgactggacgacgttctacgaacgcgggcccgccgcgcgaagcgccgcgagc
ggcaagctgtttgcgatcgccgtcgccccgctcgacgacggcttctcgatctcgacgccg
accttcaccgtcctcaccgagcgccagctgttccccgagcgcgcgtcccagccgcgccgc
cgcaagcgcgtcggacgcgagccggaagcgatcatccgcgacctcggcgagctcaccgaa
ggcgcgccgatcgttcacgaggatcacggcgtcggccgctatcgcggactggtgacgctc
gacgtcggcggcacacccggcgaattcctcgacatcgaatacgccaagggcgatcggctg
tacgtgccggtcgcgcagctgcacctcatcaaccgctattccggcgcgtcggaagaaacg
gcgccgctgcattcgctcggcggcgagcagtggcagaaggcgaagaagaaggcggcggaa
aaggtccgcgacgtcgccgccgaactgctcgaaatccaggccaagcgccaggcgcgcgcg
ggcctcgcgatcgatgtcgatcgcaccatgtacgagccgttcgccgcgacgttccccttc
gaggaaacgcccgaccaggccgctgcgatcagcgcggtggtgcgcgacctgcagtccagc
cagccgatggatcgcgtggtctgcggcgacgtcggcttcggcaagacggaagtcgcggtg
cgcgcggcgttcaccgcggccgccggcggcaagcaggtcgcgctgctggtgccgaccacg
ctgctggccgaacagcactaccgcaacttccgcgaccgcttcgccgactggccgatccgc
gtcgaagtgctgtcgcgtttcaagtcgaagaaggagatcgcggccgaactcgaaaaggtc
acggagggcaccatcgacgtgatcgtcggcacgcaccggctcttgcagccggacgtgaag
ttcaaggacctcggcctcgtcatcgtcgacgaggaacagcgcttcggcgtgcgccagaag
gaggcgctgaaggcgctgcgcgcgaatgtgcacttgctgacgctcaccgcaacacccatt
ccgcgcacactcaacatggcgatggcgggcctgcgcgatctctcgatcatcgcgacgcca
cccgcgcatcgcctcgccgtgcagaccttcgtcgttccttgggacgacgcgcagctgcgt
gaagccttccagcgcgagctctcgcgtggcggccaggtctatttcctgcacaacgacgtc
gaatcgatcggccgcatgcagcgccagctgcaggaactcgtgcccgatgcccgcatcggc
gtcgcgcacggccagatgccggagcgcgagctcgagcgcgtgatgctcgacttccacaag
cagcgcttcaacgtgctgctgtcgacgacgatcatcgagtcgggcatcgacatcccgaac
gcgaacacgatcatcatcaaccgcgccgacaagttcggcctggcgcagttgcaccagctg
cgcggtcgcgtcggtcgttcgcaccatcgtgcgtatgcgtacctcgtcatcccggatcgc
aaggcgatcacggcggacgccaggaagcggctggatgcgatcgaggccatggacgagctc
ggtgccggcttcacccttgcgacgcacgatctcgagatccgcggcgcgggcgagttgctg
ggcgaggagcagagcggccagatggcggaggtcggcttcagtctctacaccgagctgctg
gaacgcgccgtgcgctcgatccgccagggcaagctgcccgatgtcgacatggtcgaagcg
cgcggtgcggacgtcgaactgcacgttccggccctgatccccgatgactacctgcccgac
gtgcacacgcgcctgacgctgtacaagcgcatcagcagcgcgcgcaatgcggacgagctg
cgcgagttgcaggtcgagatgatcgaccgtttcggcctgcttccggatgcggccaagaac
ctgttcaccgtcgccgaactcaagctcgaggcgacacgcctgggcatccgcaagctcgag
ctcggcgaaaagaccgggcgcgtgcagttcgtcgaaaagccgaacgtcgacccgatggcg
gtcatcaagctgatccaaggccagcccaagctgtaccggatggacggtccggacaagctg
aagctgtcgctcgatctgcccgaggcggcgcagcgcgtcgctgccgcgcgcgggctgctg
atcaccttggcggcgcgctga
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