Lysobacter sp. TY2-98: DWG18_09860
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Entry
DWG18_09860 CDS
T05586
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lyt
Lysobacter sp. TY2-98
Pathway
lyt03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lyt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DWG18_09860 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lyt03021
]
DWG18_09860 (rpoC)
03400 DNA repair and recombination proteins [BR:
lyt03400
]
DWG18_09860 (rpoC)
Enzymes [BR:
lyt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DWG18_09860 (rpoC)
Transcription machinery [BR:
lyt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DWG18_09860 (rpoC)
DNA repair and recombination proteins [BR:
lyt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DWG18_09860 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AXK72550
UniProt:
A0A345ZLC5
LinkDB
All DBs
Position
complement(2029236..2033456)
Genome browser
AA seq
1406 aa
AA seq
DB search
MKDLLNLFNQQRTTIDFDAIKIGLASPDLIRSWSYGEVKKPETINYRTFKPERDGLFCSA
IFGPIKDYECLCGKYKRMKHRGVVCEKCGTEVTLAKVRRERMGHIDLASPVAHIWFLKSL
PSRIGLMLDMTLRDIERILYFEAFVVTEPGLTPMERGQLLTEEQFLQARQEHGDDFEAAM
GAEAIYELLRTIDLQSEMVTLREDIASTGSETKLKRLTKRIKLIEAFIESGNRPEWMVMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLRRLLELNAPDIIVRNEKRMLQ
ESVDALMDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPT
LRLHECGLPKKMALELFKPFIFSKLQRRGLATTIKAAKKLVEREEAQVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEA
RALMMSSNNILSPANGEPIIVPSQDVVLGLYYMSRALVNKKGEGMAFANVAEVKRAYDNR
VVELHAKVKVRITQTVIAEDGTRSKQTSIVDTTVGRALLQEILPEGLSFELANTELTKKN
ISRLINSCYRQLGLKDTVIFADQLMYTGFAYATRAGVSIGIDDMTIPNEKKGILAEAEAE
VLEIQEQYQSGLVTAGERYNKVVDIWSRTNERVAKAMMDAIGTETVEGSDGKPVAQKSMN
SIYIMADSGARGSQAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVITESDCGTLEGLTMTPIVEGGDVVEPLKERVL
GRVVAEDVFLPGNDEDPIVTRNTLLDEAWVAKLEEASVQSIKVRSTITCETPFGVCASCY
GRDLGRGHLVNHGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASRAAAIDNITVKTTGSIK
FNNLKHVEHANGHLVAVSRSGELSVLDAHGRERERYKLPYGATITVRDGAEIKAGQQVAN
WDPHNHPIVSEVKGFMRFIDFVDGVTVIQKTDELTGLASSEITDPKRRGTQAKDLRPLVR
IVDANGKDLQIPGTDLPAQYMLPPRSIVNLQDGAPVGVGDVVAKIPQEASKTRDITGGLP
RVADLFEARKPKDPAILAEVSGIVSFGKDTKGKQRLIIKQADGSEHEELIPKYRQIIVFE
GEHVEKGETVVDGEPNPQDILRLLGVEPLAVYLTKEIQDVYRLQGVKINDKHIEVIVRQM
LRKVEIVDAGDSKFLAGEQVERQRLIEENQRLATRNEILAKYEPVLLGITKASLATESFI
SAASFQETTRVLTEAAVRGTRDTLRGLKENVIVGRLIPAGTGLAYHSQRRKNASGLTDQE
LETLSAPATVGEAPAAAEAVEGGEEE
NT seq
4221 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacctgctcaatctgttcaaccagcagcgcacgacgatcgacttcgacgcgatc
aagatcggtctggcttcgccggacctgatccgctcctggtcgtacggcgaagtgaagaag
cccgagacgatcaactaccgcacgttcaagcccgagcgtgacggcctgttctgctcggcg
atcttcggcccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcatgaagcac
cgcggcgtggtctgcgagaagtgcggcaccgaagtcacgctggccaaggtgcgccgtgag
cgcatgggccacatcgacctcgcgtcgccggtggcgcacatctggttcctgaagtcgctt
ccgtcgcgcatcggcctgatgctcgacatgaccctgcgtgacatcgagcgcatcctgtac
ttcgaagccttcgtggtgacggagccgggcctgacgccgatggagcgtggccagctgctg
accgaagagcagttcctgcaggcacgccaggagcacggcgacgacttcgaagccgcgatg
ggcgccgaggcgatctacgagctgctgcgcacgatcgacctgcagtcggagatggtcacg
ctgcgcgaggacatcgcgtcgacgggttcggagaccaagctcaagcgcctcaccaagcgc
atcaagctgatcgaggccttcatcgagtccggcaaccgcccggagtggatggtcatgacc
gtcctgccggtgctaccgccggatctgcgtccgctcgtcccgctggacggtggccgcttc
gcgacgtcggacctcaacgatctgtaccgccgcgtcatcaaccgcaacaaccgcctgcgt
cgcctgctcgaactcaatgcgcccgacatcatcgtgcgcaacgagaagcgcatgctgcag
gagtcggtcgatgcgctgatggacaacggccgtcgtggccgcgccatcaccggcaccaac
aagcgtcctttgaagtcgctcgccgacatgatcaagggcaagcagggtcgcttccgccag
aacctgctcggcaagcgcgtcgactactcgggccgttcggtcatcgtggtcggcccgacg
ctgcgtctgcacgagtgcggcctgccgaagaagatggcgctcgagctgttcaagcccttc
atcttctccaagctgcagcgccgtggcctcgccacgacgatcaaggcggcgaagaagctc
gtcgagcgcgaagaggcccaggtgtgggacatcctcgaagaggtgatccgcgaacacccg
gtcatgctcaaccgcgcgccgacgctgcaccgcctcggcatccaggcgttcgagccggtc
ctgatcgaaggcaaggcgatccagctgcatccgctcgtgtgtacggcgttcaacgccgac
ttcgacggtgaccagatggccgtgcacgtgccgctctcgctggaagcccagctggaagcg
cgcgcgctgatgatgtcgtcgaacaacatcctgtcgccggcgaacggcgagccgatcatc
gtgccgtcgcaggacgtcgtgctcggcctgtactacatgtcgcgcgccctggtgaacaag
aagggcgagggcatggcgttcgcgaacgtcgccgaggtcaagcgcgcgtacgacaaccgc
gtcgtcgagctgcacgccaaggtcaaggtccgcatcacgcagaccgtgatcgcggaagac
ggcacgcgttcgaagcagacgtcgatcgtcgacaccaccgtcggccgcgcactcctgcag
gaaatcctgccggaaggcctgtcgttcgagctcgccaacaccgagctgaccaagaagaac
atctcgcgcctgatcaacagctgctatcgccagctgggcctcaaggacacggtgatcttc
gccgaccagctgatgtacaccggcttcgcgtacgccacgcgcgccggcgtgtcgatcggc
atcgacgacatgaccatcccgaatgagaagaagggcatcctcgccgaggcggaagccgaa
gtgctggagatccaggagcagtaccagtcgggtctggtcaccgccggcgagcgttacaac
aaggtcgtcgacatctggtcgcgcacgaacgagcgcgtcgcgaaggcgatgatggacgcc
atcggcaccgagaccgtcgaaggttcggacggcaagccggtcgcgcagaagtcgatgaac
tcgatctacatcatggccgactcgggtgcgcgtggttcgcaggcgcagatccgtcagctc
gccggtatgcgcggcctgatggccaagccggacggctcgatcatcgagacgccgatcacc
gcgaacttccgcgaaggcctgaacgttctccagtacttcatctcgacccacggtgcccgt
aagggcctcgcggataccgcgctgaagacggcgaactcgggttacctcacgcgtcgtctg
gtcgacgtcgcgcaggacgtggtcatcaccgagagcgattgcggcacgctcgaaggcctg
accatgaccccgatcgtcgaaggcggcgatgtcgtcgaaccgctgaaggagcgcgtgctc
ggtcgcgtggtcgccgaggacgtgttcctgccgggcaacgacgaggatccgatcgtcacc
cgcaatacgctgctcgacgaagcctgggtcgccaagctcgaagaagcgagcgtgcagtcg
atcaaggtgcgttcgaccatcacctgcgaaacgccgttcggcgtctgcgcatcgtgctat
ggccgtgacctcggccgcggccacctcgtcaaccacggcgaagcggtcggtgtcgtcgcg
gcgcagtcgatcggtgagccgggcacgcagctgacgatgcgtacgttccacatcggtggt
gcggcatcgcgagcggcggcgatcgacaacatcacggtcaagacgacgggttcgatcaag
ttcaacaacctcaagcacgtcgagcacgccaacggccacctggtcgcggtgtcgcgttcg
ggcgaactgtcggtgctcgatgcgcacggccgcgagcgcgagcgctacaagctgccgtac
ggcgcgacgatcaccgtgcgtgacggtgcggagatcaaggcgggccagcaggtcgccaat
tgggatccgcataaccacccgatcgtgtcggaagtgaagggcttcatgcgcttcatcgac
ttcgtcgacggcgtcaccgtcatccagaagaccgacgaactgaccggcctcgcatcgagc
gagatcaccgatccgaagcgtcgtggtacgcaggcgaaggatctgcgtccgctggtgcgc
atcgtcgatgcgaacggcaaggatctgcagatcccgggtaccgacctgccggcgcagtac
atgctgccgccgcgttcgatcgtcaacctgcaggacggggcgccggtgggcgtgggcgac
gtggtcgcgaagattccgcaggaagcttcgaagacccgcgacatcaccggtggtctgccg
cgcgtggccgacctgttcgaagcgcgcaagccgaaggatccggcgattctcgccgaagtc
tccggcatcgtttcgttcggcaaggacaccaagggcaagcagcgcctgatcatcaagcag
gccgacggcagcgagcacgaagagctgatcccgaagtaccgccagatcatcgtgttcgaa
ggcgagcacgtggagaagggcgagacggtcgtcgacggcgagcctaacccgcaggacatc
ctgcgcctgctcggcgtcgagccgctggccgtgtacctgaccaaggaaatccaggacgtc
tatcgcctgcagggcgtcaagatcaacgacaagcacatcgaggtgatcgttcgccagatg
ctgcgcaaggtcgagatcgtcgacgcgggtgacagcaagttcctggccggcgagcaggtc
gagcgtcagcgtctgatcgaagagaaccagcgcctcgcgacgcgcaacgagatcctggcg
aagtacgagccagtgctgctcggcatcaccaaggcctcgctggcgaccgagtcgttcatc
tcggcggcctcgttccaggagaccacccgcgtgctcaccgaggcggccgtccgcggcacc
cgcgacacgctgcgcgggctcaaggagaacgtgatcgtcggtcgcctgatcccggccggt
accggtctggcgtaccacagccagcgccgcaagaacgcctcgggcctgaccgatcaggaa
ctcgagacgctctcggcgcccgcgacggtcggtgaggctccggccgctgccgaagcggtc
gagggcggcgaggaagagtga
DBGET
integrated database retrieval system
