Lysobacter sp. TY2-98: DWG18_09865
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Entry
DWG18_09865 CDS
T05586
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
lyt
Lysobacter sp. TY2-98
Pathway
lyt03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lyt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DWG18_09865 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lyt03021
]
DWG18_09865 (rpoB)
03400 DNA repair and recombination proteins [BR:
lyt03400
]
DWG18_09865 (rpoB)
Enzymes [BR:
lyt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DWG18_09865 (rpoB)
Transcription machinery [BR:
lyt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DWG18_09865 (rpoB)
DNA repair and recombination proteins [BR:
lyt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DWG18_09865 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
DOCK-C2
Motif
Other DBs
NCBI-ProteinID:
AXK72551
LinkDB
All DBs
Position
complement(2033537..2037688)
Genome browser
AA seq
1383 aa
AA seq
DB search
MTTYSFTEKKRIRKDFGKRRAILEVPFLLAIQVDSYREFLQEHTDPAKREDKGLHAALKS
VFPIASYSGNAALEYVGYKLGEPAFDERECRTRGMSYGAPLRVTVRLVIYDRESSTKAIK
YVKEQEVYMGEIPLMTENGTFIVNGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSAR
IIPYRGSWLDFEFDPKDAVFCRIDRRRKLPVTILLRALGYNNEEMLKSFFDINTFHIQPE
GVQLELVPERLRGETLDFDLADGDKVIVEAGRRVTARHVRQLEQAGISALAVPDSYLAGR
ILSHDVVDPKTGELLANANEELNDAHLEAFRKAGIAQVGTLWVNDLDRGPYISNTLRIDP
TKTQLEALVEIYRMMRPGEPPTKDAAQNLFHNLFFTFERYDLSGVGRMKFNRRLGRKETE
GAAVLYDAKYFQDRKDEESARLRGIYAQTSDILDVIRVLTEIRNGRGVVDDIDHLGNRRV
RSVGEMAENTFRVGLVRVERAVKERLSMAESEGLTPQELINAKPVAAAIKEFFGSSQLSQ
FMDQNNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCTIETPEGPNIGLIN
SLAVFARTNRYGFLETPYRRVVDGKVTEEIEFLSAIEENEYVIAQANAPQDEKGTMTAQF
VACRYQGESLLKPPSEVHFMDVSPMQTVSVAAALVPFLEHDDANRALMGANMQRQAVPTL
RAQKPLVGTGIERAVARDSGVTVNARRGGVIEAIDAARIVVKVNEGEVNEGLDAGVDIYN
LVKYTRSNQNTCINQRPLVKVGDRIERGDVLADGPSTDIGELALGQNMLVAFMPWNGYNF
EDSILLSERVVEEDRYTTIHIEELTVQARDTKLGPEEITADIPNVSEQALGRLDESGVVY
IGAEVRAGDILVGKVTPKGESQLTPEEKLLRAIFGEKASDVKDSSLRVPPGMDGVVIDVQ
VFTRDGIEKDKRARQIEESEIRRVKKDFDDQFRILEAAIYDRLRGQLLGKVANGGAGLKK
GDTVTSLVLDSLSKKDWFTLRMKDDDAVEAIERAQKQIDEYQKEFERRFADKRGKITQGD
DLAPGVLKMVKVFLAVKRRIQPGDKMAGRHGNKGVVSTIVPVEDMPYSADGTTVDIVLNP
LGVPSRMNIGQILEVHLGWAAKGLGKKIDRMLQAQAAVSDLRKFLGEIYNHDTGVVGERV
DLSQFSDEELIRLAKNLTDGVPMATPVFDGAAETEIKKMLELAELPLSGQTVLHDGRTGE
AFERPVTVGYMHMLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALE
AYGAAYTLQEMLTVKSDDVQGRNQMYKNIVDGDYEMVAGMPESFNVLVREIRSLAINMEL
EEH
NT seq
4152 nt
NT seq
+upstream
nt +downstream
nt
atgacgacgtactcgttcaccgagaaaaagcgcatccgcaaggatttcggcaagcgccgc
gcgatcctcgaagtgcccttcctgcttgcgatccaggtcgactcgtaccgcgagttcctg
caggagcacaccgaccccgccaagcgtgaggacaagggcctgcacgccgcgctcaagtcg
gtcttcccgatcgcgagctacagcggcaatgccgcactcgaatacgtcggctacaagctc
ggcgagcccgcgttcgacgagcgcgagtgccgcacgcgtggcatgagctacggcgcgccg
ctccgggtgaccgttcgcctggtgatctacgaccgcgagtcgtcgaccaaggcgatcaag
tacgtgaaggagcaggaggtctacatgggcgagatcccgctcatgaccgaaaacggcacc
ttcatcgtcaacggcaccgagcgcgtcatcgtctcgcagctgcaccgttcgccgggcgtg
ttcttcgaccacgaccgtggcaagacgcacagctcgggcaagctgctgtacagcgcgcga
atcattccttaccgcggttcgtggctggacttcgagttcgaccccaaggacgcggtgttc
tgccgcatcgaccgtcgccgcaagctgccggtgacgatcctgctgcgcgcgctcggctac
aacaacgaagagatgttgaagtcgttcttcgacatcaacacgttccacatccagccggaa
ggcgtgcagctcgagctcgtgccggagcgtctgcgcggtgaaacgctggacttcgacctg
gccgacggtgacaaggtcatcgtggaagccggtcgtcgcgtgaccgcgcgtcacgtgcgc
cagctcgagcaggccggtatctccgcactcgccgtgccggacagctacctcgccggtcgc
atcctgtcgcacgacgtcgtcgatccgaagacgggcgagctgctcgcgaacgcgaacgaa
gagctcaacgacgcgcacctcgaagcgttccgcaaggcgggcatcgcgcaggtcggcacg
ctgtgggtcaacgacctcgaccgcggtccgtacatctcgaacacgctgcgcatcgatccg
accaagacgcagctcgaagcgctggtcgagatctaccgcatgatgcgtccgggtgagccg
ccgacgaaggacgccgcgcagaacctattccacaacctgttcttcacgttcgagcgctac
gacctgtcgggcgtgggtcgcatgaagttcaaccgtcgcctcggccgcaaggaaaccgaa
ggcgcggcggtgctgtacgacgccaagtacttccaggatcgcaaggacgaagagtccgca
cgcctgcgcggcatctacgcgcagacgtccgacatcctcgacgtcatccgcgtgctgacg
gaaatccgcaacggtcgcggcgtggtcgacgacatcgaccacctcggcaaccgtcgcgtg
cgttcggtcggtgaaatggcggagaacaccttccgcgtcggcctcgtgcgcgtcgagcgt
gcggtcaaggagcgcctgtcgatggcggagtccgaaggcctcacgccgcaggaactcatc
aacgccaagcccgtcgcggccgcgatcaaggagttcttcggctcctcgcagctgtcgcag
ttcatggaccagaacaacccgctgtcggaagtcacgcacaagcgtcgcgtgtcggccctc
ggcccgggcggtctgacgcgtgagcgtgccggcttcgaagtgcgcgacgtgcacccgacg
cactacggtcgcgtctgcaccatcgaaacgccggaaggcccgaacatcggcctgatcaac
tcgctcgccgtgttcgcacgtacgaaccgctatggcttcctcgagacgccgtaccgccgt
gtcgtcgacggcaaggtgaccgaagagatcgagttcctttcggcgatcgaagagaacgag
tacgtcatcgcccaggccaacgcgccgcaggacgagaagggcacgatgacggcgcagttc
gtcgcctgccgttaccagggcgaatcgctgctcaagccgccgagcgaagtccacttcatg
gacgtctcgccgatgcagaccgtgtcggtcgcggccgcgctcgtgccgttcctcgagcac
gacgacgcgaaccgcgcactcatgggcgcgaacatgcagcgccaggcggtgccgacgctg
cgtgcgcagaagccgctggtgggcacgggcatcgagcgcgccgtggcacgcgactcgggc
gtgaccgtgaatgcgcgccgcggtggcgtgatcgaagcgatcgacgccgcgcgcatcgtc
gtcaaggtcaacgaaggtgaagtcaacgaaggcctcgacgccggcgtcgacatctacaac
ctcgtcaagtacacgcgttcgaaccagaacacctgcatcaaccagcgtccgctggtgaag
gtcggtgatcgcatcgagcgcggcgacgtgctggccgacggtccgtcgaccgacatcggc
gagctcgcgctcggccagaacatgctggtcgcgttcatgccgtggaacggctacaacttc
gaagactcgatcctgctcagcgagcgcgtcgtcgaagaagatcgctacacgacgatccac
atcgaagaactgaccgtccaggcgcgcgacaccaagctcggaccggaggaaatcaccgcc
gacatcccgaacgtgtccgagcaggcgctcggccgtctcgacgagtcgggcgtggtctac
atcggtgcggaagtgcgcgcgggcgacatcctcgtcggcaaggtcacgccgaagggcgag
agccagctgacgccggaagagaagctgctccgcgcgatcttcggcgagaaggcgtccgac
gttaaggacagctcgctgcgcgtgccgccgggcatggacggcgtcgtcatcgacgtgcag
gtcttcacccgcgacggcatcgagaaggacaagcgcgcgcgtcagatcgaagagagcgaa
atccgtcgggtcaagaaggacttcgacgaccagttccgcatcctcgaggcggcgatctac
gaccgtctgcgtggccagctgctcggcaaggtggcgaacggcggtgccggcctcaagaag
ggcgacacggtcacgtcgctggtgctcgacagcctgtccaagaaggactggttcacgttg
cgcatgaaggacgacgacgcggtcgaggcgatcgagcgcgcgcagaagcagatcgacgaa
taccagaaggaattcgagcgtcgcttcgccgacaagcgcggcaagatcacccagggcgac
gacctcgcgccgggcgtgctcaagatggtcaaggtcttcctcgccgttaagcgccgcatc
cagccgggcgacaagatggccggccgccacggcaacaagggtgtcgtgtcgacgatcgtt
ccggtcgaagacatgccgtacagcgccgacggcaccaccgtcgacatcgtgctgaacccg
ctgggcgttccgtcgcgaatgaacatcggccagatcctcgaagtccaccttggttgggcg
gcgaagggcttgggcaagaagatcgatcgcatgctgcaggcgcaggccgcggtgtcggat
ctgcgcaagttcctcggtgagatctacaaccacgacaccggcgtggtcggtgagcgcgtc
gacctgtcgcagttctccgacgaggagctgattcgcctcgccaagaacctgaccgacggc
gtgccgatggcgacgccggtgttcgacggcgcggccgagaccgagatcaagaagatgctc
gagctcgccgagctgccgctgagcggccagaccgtgctgcacgacggtcgtaccggcgaa
gcgttcgaacgtccggtcaccgtcggctacatgcacatgctgaagctgaaccacctggtc
gacgacaagatgcacgcgcgttcgaccggtccgtactcgctcgtcacccagcagccgctg
ggcggcaaggcgcagttcggcggtcagcgtttcggcgagatggaagtctgggcgctggaa
gcgtacggcgcggcctacaccctgcaggaaatgctgacggtgaagtccgacgacgtgcag
ggccgcaaccagatgtacaagaacatcgtcgacggcgactacgagatggtcgcgggcatg
ccggagtccttcaacgttctcgtgagggaaatccgctcgctggcgatcaacatggagctt
gaggagcactga
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integrated database retrieval system
