Lysobacter sp. TY2-98: DWG18_14455
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Entry
DWG18_14455 CDS
T05586
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
lyt
Lysobacter sp. TY2-98
Pathway
lyt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lyt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DWG18_14455 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lyt03019
]
DWG18_14455 (rhlB)
Enzymes [BR:
lyt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DWG18_14455 (rhlB)
Messenger RNA biogenesis [BR:
lyt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DWG18_14455 (rhlB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
RhlB
ResIII
Cas3-like_C_2
C6orf89_N
Helicase_C_2
Motif
Other DBs
NCBI-ProteinID:
AXK73360
LinkDB
All DBs
Position
3006214..3007953
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AA seq
579 aa
AA seq
DB search
MSDKPLTDVSFTSFDLHPALLAGLEAAGFTRCTPIQALTLPLALAGRDVAGQAQTGTGKT
LAFLVAVVNRLLTRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGSDLGLKFALVYG
GVDYDKQRQILQQGADVIIATPGRLIDYVKQHKVVSLHACEMCVLDEADRMFDLGFIKDI
RFLLRRMPERTTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETESITAARVRQKVYYPS
DEEKIPLLIGLLSRSEGARTMVFVNTKAFVERVARALEKAGYRVGVLSGDVPQKKRESLL
KKFQAGQLEILVATDVAARGLHIDGVSHVYNYDLPFDAEDYVHRIGRTARLGAEGDAISF
ACERYGMSLPDIEAYIEQKIPGEHVSPEMLTALPRPVREKVEGEEEESVSTIFREAREQK
AEDDARRGIKPRSGGRTGSGGRDGERRPRGPKPERAAGEPRREAKPEPAASVAGDAVGEA
AKAPRPPRIDPVTGQELPARKRRRRRRGKPVDGAAATDAGTPNATAATRSERGPARHDAR
PPRAATESPKASVEAKPGLLHRVARGLKSLITRAPRSQH
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacaaacccttaaccgacgtttcctttacctcgttcgacctgcaccccgcgctg
ctcgcgggccttgaagccgccggcttcacgcgctgcacgccgatccaggccctcaccctt
ccgctggcactggccggccgcgacgtcgccggccaggcgcagaccggcaccggcaagacg
ctcgccttcctcgtcgccgtcgtgaaccggctgctgacccgcccggcgctcgccgaccgc
aagccggaagatccgcgcgcgctgatcctcgcgccgacccgcgagctcgcgatccagatc
cacaaggacgcggtgaagttcggctccgatctcggcctgaagttcgcgctggtctacggc
ggcgtcgactacgacaagcaacggcagatcctgcagcagggcgccgacgtcatcatcgcg
acgcccggtcgactcatcgactacgtcaagcagcacaaggtcgtgtcgctgcatgcgtgc
gagatgtgcgtgctcgacgaagccgaccgcatgttcgacctcggcttcatcaaggacatc
cgcttcctgctgcgtcgcatgcccgagcgcaccacgcggcagacgctgctgttctccgcg
acgctgagccatcgcgtgctcgaactcgcctacgagcacatgaacgagccggagaagctc
gtcgtcgagacggaaagcatcaccgccgcacgtgtgcgccagaaggtgtactacccgtcg
gacgaagagaagattccgctgctgatcggcctgctgtcgcgcagcgaaggcgcgcgcacg
atggtgttcgtcaacaccaaggcgttcgtcgagcgtgttgcgcgtgcgctggagaaggcg
ggctaccgcgtcggcgtattgagtggcgatgtgccgcagaagaagcgcgaatcgctcctg
aagaagttccaggccggccagctcgagatcctcgtcgcgaccgacgtcgccgcgcgcggc
ctgcacatcgacggcgtttcgcacgtctacaactacgacctgccgttcgacgccgaggac
tacgtccaccgcatcggccgcacggcacgcctcggcgccgaaggcgacgcgatcagtttc
gcctgcgagcgctacggcatgtcgctgcccgacatcgaggcctacatcgagcagaagatc
ccgggcgagcacgtatcgcccgagatgctcaccgccctgccgcgcccggttcgcgagaag
gtggaaggcgaggaagaggagagcgtcagcacgatcttccgcgaggcgcgcgagcagaag
gccgaggacgacgcgcgtcgcggcatcaagccgcgtagcggtggccgcacgggttccggt
ggtcgtgatggcgagcgtcgtccgcgcggccccaagcccgagcgcgcggccggcgagccg
cgccgcgaagcgaagccggagccggccgcgtccgtcgcaggcgatgcagtgggcgaggcc
gccaaggcgccacgtccgccgcgcatcgatccggtgacggggcaggaactgccggcgcgc
aagcgtcgtcgccgtcgtcgcggcaagccggtcgatggcgccgccgcgacggatgcgggc
acgccgaacgccacagccgcgacgcgcagcgagcgcggtccggcgcgccacgacgcgcgt
ccgccgcgggccgcgactgaatcgccgaaggccagtgtcgaagcgaagccgggcctgctg
catcgcgtcgcacgcgggttgaagtcgctgatcacgcgcgcgccgcgcagccagcactga
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