Lysobacter sp. CW239: H2514_00550
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Entry
H2514_00550 CDS
T10688
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
lyw Lysobacter sp. CW239
Pathway
lyw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lyw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H2514_00550 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lyw03021
]
H2514_00550 (rho)
03019 Messenger RNA biogenesis [BR:
lyw03019
]
H2514_00550 (rho)
Transcription machinery [BR:
lyw03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
H2514_00550 (rho)
Messenger RNA biogenesis [BR:
lyw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
H2514_00550 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
Spore_III_AA
S1CSD-TOTE-2
OB_RNB
AAA
AAA_25
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QOD92307
UniProt:
A0A7L8D2M8
LinkDB
All DBs
Position
complement(142935..144830)
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AA seq
631 aa
AA seq
DB search
MRKPRVSKATADAAPARTAAPKAEAPAATASKAPAAPVAPPAAAPKAAAAAPSEPGAPAV
SASAPARSPQSASAPSPASQPTAAAGNVPPVNQPNKTAAAAESTASGNTGSGQASPDQAS
PHPGNDGGNGEPSGQPREHQREGQGPREGQNRDQEGGRSNNRRERFRNKRDRGGERKGGG
GGGNRDGLPSDDGGNETFVPRANPQVPEGFPQYSLGDLKRMQAYKLLEIAEQLNISEGVA
RARKQDVIFAVLKVLTRHGEGVAADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQIR
RFNLRTGDHLSGRIRFPKDGERYFALSIVDTINGEPLEASKNKVLFENLTALFPRRKFTL
ERGDGSTEDITGRILDLMAPQGKGQRALIVSPPKAGKTMMMQQIATAISHNHPDVHMIVL
LIDERPEEVTEMQRTVRGEVISSTFDEPAGRHVQVAEMVIERAKRLVEHKKDVVILLDSI
TRLARAYNNVLPSSGKVLSGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKM
DEVIYEEFKGTGNSEVHLNRRIAEKRVYPAIDINRSGTRREDYLIEPELLQKIWILRKLL
HGMDEIGAMEFLLDKMKSTKSNDEFFSSMKR
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
gtgcgcaagccgcgcgtgagcaaggccaccgccgacgccgcaccggccaggaccgccgca
cccaaggcggaagcgccggccgcaacggcgtccaaggccccggccgcgccagtcgcgccg
cccgccgccgcgcccaaggctgctgccgccgccccgtccgagcctggtgcaccggccgtg
agcgccagcgctcccgcccgatccccacagtccgccagcgcaccgtcgcctgcgagccag
ccaacggccgccgccggcaacgtgccaccggtgaaccagccgaacaagaccgccgccgcc
gcggagtccaccgcatcgggcaataccggctccggccaggccagccccgatcaggccagc
ccccatcccggcaacgacggcggcaatggcgagccctccggccagccgcgcgagcaccag
cgcgaaggccagggcccgcgtgaaggccagaaccgcgaccaggaaggcggccgcagcaac
aaccgccgcgagcgcttccgcaacaagcgcgaccgcggcggcgagcgcaagggcggcggt
ggcggcggcaaccgcgacggcctgcccagcgacgacggcggcaacgagacgttcgtcccg
cgcgccaacccgcaggtgcccgagggcttcccgcagtactcgctgggcgacctgaagcgg
atgcaggcctacaagctgctggaaatcgccgagcagctgaacatctccgaaggcgtcgcc
cgcgcgcgcaagcaggacgtcatcttcgcggtgctgaaggtgctgacccgccacggcgaa
ggcgtcgccgccgacggcgtgctggagatcctgccggacggcttcggcttcctgcgcgcg
gccgaggccagctacctggccggcccggacgatacctacatctcgcccagccagatccgc
cgcttcaacctgcgcaccggcgaccacctgtctggccgcatccgtttccccaaggacggc
gagcgctactttgccctgtcgatcgtcgacacgatcaacggcgagccgctggaagcgtcc
aagaacaaggtgctgttcgagaacctgaccgcgctgttcccgcgccgcaagttcaccctg
gagcgcggcgacggctccaccgaggacatcaccggccgcatcctcgatctgatggcgccg
cagggcaagggccagcgcgcgctgatcgtcagcccgccgaaggccggcaagacgatgatg
atgcagcagatcgccaccgcgatcagccacaaccaccccgacgtgcacatgatcgtgctg
ctgatcgacgagcggcccgaggaagtcaccgagatgcagcgcaccgtgcgcggcgaggtc
atctcctcgacgttcgacgagcccgccggccgccacgtgcaggtcgccgagatggtgatc
gagcgcgccaagcgcctggtcgagcacaagaaagacgtggtgatcctgctcgactcgatc
acccgcctggcacgcgcctacaacaacgtcctgcccagttcgggcaaggtgctgtccggc
ggcgtcgacgccaacgcgctgcaccggccgaagcggttcttcggcgcggcgcgcaacgtg
gaggaaggcggctcgctgacgatcatcgccaccgcgctggtcgataccggcagcaagatg
gacgaggtgatctacgaggagttcaagggcaccggcaactccgaggtccacctgaaccgc
cgcatcgccgagaagcgcgtgtacccggcgatcgacatcaaccgctccggcacccgccgc
gaggattacctgatcgagcccgagctgctgcagaagatctggatcctgcgcaagctgctg
cacggcatggacgagatcggcgcgatggagttcctgctcgacaagatgaagagcaccaag
tccaacgacgagttcttctcctcgatgaagcggtag
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