Lysobacter sp. CW239: H2514_02260
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Entry
H2514_02260 CDS
T10688
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
lyw Lysobacter sp. CW239
Pathway
lyw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lyw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H2514_02260 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lyw03019
]
H2514_02260 (recQ)
03400 DNA repair and recombination proteins [BR:
lyw03400
]
H2514_02260 (recQ)
Enzymes [BR:
lyw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
H2514_02260 (recQ)
Messenger RNA biogenesis [BR:
lyw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
H2514_02260 (recQ)
DNA repair and recombination proteins [BR:
lyw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
H2514_02260 (recQ)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
Helicase_C
RecQ_Zn_bind
SaeA_1st
HHH_5
Motif
Other DBs
NCBI-ProteinID:
QOD91506
LinkDB
All DBs
Position
complement(538118..539944)
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AA seq
608 aa
AA seq
DB search
MENAALDLLRTTFGHPEFRGEQAAIIDCVVNGGDALVLMPTGGGKSLCYQLPAMLRKGCG
IVVSPLIALMQDQVEALHQLGVRAAFLNSTLDAATAGDIEQRLLAGELDLLYVAPERLLS
PRCLNLIDRAHAGPGIALFAIDEAHCVSQWGHDFRREYRELTVLHERWPDIPRIALTATA
DEPTRREIAERLALEDARQFVSSFDRPNIRYRVAQKDGSGQRALLDFLAGHRGDSGIVYA
FSRKRVEKTAEQLQAAGINALPYHAGMPAEVRAANQRRFLQEDGVVMVATIAFGMGIDKP
DVRFVAHVDLPKSIEGYYQETGRAGRDGEPAEAWLNYGLGDVVNLRMLINQGEASDERKR
LELRKLDALLGYCESTRCRRQALLGWFAESHPGNCGNCDNCLNPPESWDGTEVARKALSC
VYRTGQRFGAGHVIDVLRGTPTDRVVQFGHDKLSTWAIGDNLDARQWSSVFRQLVAAGLL
EADHERHGAFRLTSDAGPVLRGERQLHFRRDAPKPANTRKRNGSAPPPIDLAPEEAARFR
ALRGWRAETAREQNVPAYVIFHDATLRAIAESDPGDLDELGQIPGIGASKLERYGEAVLQ
QLLDCDVA
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atggaaaacgccgcactcgatctgcttcgcaccacctttggacaccccgaattccgcggc
gaacaagccgccatcatcgactgcgtggtcaacggcggcgatgccctcgtactgatgccc
accggcggcggcaagtcgctgtgctatcagctgccggccatgctgcgtaaaggctgcggc
attgtcgtctcgccgctgatcgccctgatgcaggaccaggtcgaagccctgcaccagctt
ggcgtgcgcgccgccttcctcaattcgaccctggatgccgccaccgccggcgacatcgag
caacggttgctggccggcgaactcgacctgctctatgtcgcccccgaacgcctgctcagc
ccgcgctgcctgaatctgatcgaccgcgcccacgcggggccgggcatcgccctgttcgcc
atcgacgaagcccactgcgtctcccagtggggccacgacttccgccgcgaataccgcgaa
ctgaccgtcctgcacgagcgctggcccgacatcccgcggatcgcgttgaccgccaccgcc
gacgagccgacccgccgcgagatcgccgaacggctggcgctggaagacgcacgccagttc
gtcagttcgttcgaccgccccaacatccgttaccgggtcgcccagaaggacggcagcggc
cagcgcgcgctgctcgacttccttgccggccatcgcggcgacagcggcatcgtgtacgcg
ttttcccgcaaacgggtcgagaagaccgccgagcagctgcaggccgccggcatcaacgcc
ctgccctaccacgccggcatgccggcggaagtgcgggccgccaaccagcgccgcttcctg
caggaggacggcgtggtgatggtcgccacgatcgctttcggcatgggcatcgacaagccc
gacgtgcgcttcgtcgcccacgtcgacctgcccaagtcgatcgagggctactaccaggag
accggtcgcgccggccgcgatggcgagccggccgaggcctggctcaactacggcctgggc
gacgtggtcaacctgcgcatgctgatcaaccagggcgaggccagcgacgagcgcaaacgg
ctggaactgcgcaagctcgacgccctgctgggctattgtgagtccacccggtgccgccga
caggcgctgctgggatggttcgccgaaagccatcccggcaactgcggcaactgcgacaac
tgcctgaacccgccggaaagctgggacggcaccgaggtcgcccgcaaggcgctgtcctgc
gtctatcgcaccgggcagcgcttcggtgccggccacgtcatcgacgtattgcgcggcacg
cccaccgaccgggtggtccagttcggccacgacaagctcagcacctgggcgatcggcgac
aacctcgatgcgcgccagtggagcagcgtgttccggcagctggtggccgccggcctgctg
gaagccgaccacgagcgccatggcgccttccgcctgaccagcgacgccggtccggtgttg
cgaggcgagcgccagttgcacttccgtcgcgatgcacccaaaccggccaacacccgcaaa
cgcaacggttccgccccgccgccgatcgacctggccccggaggaagccgcccgcttccgc
gccctgcgcggctggcgcgcggaaacggcccgcgaacagaacgtccccgcctacgtgatc
ttccacgacgcgaccctgcgcgcgatcgccgaatccgacccgggcgacctcgacgaactc
ggccagattcccggcatcggcgccagcaagctggagcgctacggcgaagcggtgctgcag
cagttgctggattgcgacgtggcgtga
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