Lysobacter sp. CW239: H2514_02270
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Entry
H2514_02270 CDS
T10688
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
lyw Lysobacter sp. CW239
Brite
Enzymes [BR:
lyw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
H2514_02270 (hrpA)
Messenger RNA biogenesis [BR:
lyw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
H2514_02270 (hrpA)
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
QOD91507
UniProt:
A0A7L8D0A8
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Position
541222..545412
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AA seq
1396 aa
AA seq
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MKPTNPVAKATLRPVDASRIDLEQARRAIDGGLSRDRGRLHGLWSRWRGRPGDADARSAF
EQALTTSVTRREARAASLPQVPADPSLPIASEAERIVELIRQHPVVVIAGETGSGKTTQL
PKLCLAAGRGAAGMIGCTQPRRIAARAVAKRVAEELNTPLGGLVGYQVRFNENVGDSTAI
KFMTDGILLAEIQSDRWLSRYDTILIDEAHERSLNIDFLLGYLKQLLKKRPDLKVIVTSA
TIDTARFSGHFDNAPVVDVEGRGHPVSVRYRPLEGGGEDDDGDGTAGRDGERTVNDAIVA
ACDEIAREDPQGDVLIFLPGEREIRDAHQALERRKYRHTEVLPLYARLSVRDQDRVFNPG
PQRRIVLATNVAETSLTVPRIRYVVDPGLARIKRYSPRSKLDRLHIEPVSQASANQRKGR
CGRVSEGTCYRLYSEADFDSRPAYTDPEIRRAALAGVILRMLSLGLGDIESFPFLEPPDP
RAIADGWAQLAELGAVEAAEQGQRKLTATGRLMARMPVDVKLARMLVAANARGCVREMLA
IASFLGIQDPRERPADQRAAADNAHAQFVDYRSEFVGILKLWDAYQTAHEEMTQSQLRRW
CEKHFLGFLRMREWRELHRQLKLMAADLGWAMTAAESSTGESSPATATSPRKRGSVTARP
PRGRRAESAAVAGVGEDAGLRLDATAYANLHRALLTGLPTQIGHRVQPADSKPPADRKAG
ERKAGDRKTGGGYEGPRGRRFQLFPGSWLIRKPPPWVLSATLLDTEKVWAMTNAAIEPQW
AIDELGQLLARRHYDPRWSRSQGRVVGSEQISLFGLVLAPKRPVHYGGLYPEESRAIFAR
DALVTGEINTRSGFLQRNLAMLDKAREEEAKQRRAGLVVDEDWMAAWYLERLPPDVHNAQ
ALDAWYGKLPAPRKAALEWSLDDLLVGDETDAARFPPEIALGDARLAVSYRFEPGAPDDG
MTVSVPLHLLNALDPVRLDWLAPGFAQDKAMALIRSLPKAQRRNFVPAPDFARAFHEAHP
GPEEAPFAEVLARFLQQVTGAAVAADEFDESALEPHLRANLRLLDAPGRDGKRNVLAESR
DLAELRTRFGERAARAFAAHAADGLGQRGLLAFPEEPIPASLPGAAGMPAYPALHDDGDS
VSLQVHAEQETARRHHPRGVRRLLWLALSDARKQARRQLPISPKTGLLYAAIESAAPRAQ
GSRDGDRLRADLVDGAFAALVADGLDGIRDAAAFDARREDVAKRLFAESMERLQQAEVIL
AAVSQARASLESPLMGWASANLDDMRAQLAALTPPGFLRDVPATALRDYPRYLKALALRG
ERALRDPVRDQARMLELTPFIAALAQAEASGASAEPGWQALRWELEELRVSLFAQELGSR
GVSPKKLAARLSQLRR
NT seq
4191 nt
NT seq
+upstream
nt +downstream
nt
atgaagcctaccaaccccgttgccaaagccacgttacgacccgttgacgcctcgcgcatt
gacctggagcaggcgcgtcgggcgatcgacggcggattaagccgggatcgcggccgcctg
cacggcttgtggtcgcgttggcgcggccggccgggcgatgcggatgcccggtcggcattc
gagcaggccctgacaacgtcggtgacccggcgcgaggcgcgtgccgcgagcctgccgcag
gtgccggcggatccgtcgctgccgatcgccagcgaggccgagcgcatcgtcgaactgatc
cgccagcatccggtggtggtgatcgccggcgagaccggttcgggcaagaccacgcaattg
ccgaaactgtgcctggccgccggtcgcggcgccgccggcatgatcggctgcacccagccg
cgccggatcgccgcgcgtgcggtcgccaaacgggtcgcggaggagctgaacacccccttg
ggcggattggtcggctaccaggtccggttcaacgagaacgtcggcgattcgaccgcgatc
aagttcatgaccgacggcatcctgctggcggagatccagtccgaccgctggctgtcgcgc
tacgacacgatcctgatcgacgaggcgcacgagcgcagcctcaacatcgatttcctgctc
ggctacctcaaacagctgctgaagaaacgtcccgacctgaaggtcatagtgacctcggcg
acgatcgataccgcacgcttttccgggcatttcgacaacgccccggtggtggacgtggag
ggccgcgggcatccggtgtcggtgcgctaccggccgctcgaaggtggcggcgaggacgac
gacggcgatggcacggcaggccgcgacggcgagcgtacggtcaatgatgcgatcgtcgcc
gcctgcgacgagatcgcgcgcgaggacccgcagggcgacgtgctgatcttcctgcccggc
gagcgcgagatccgtgatgcgcaccaggcgctggagcgacgcaagtaccgccacaccgaa
gtgctgccgctgtatgcgcggctgtcggtgcgcgaccaggaccgggtgttcaaccccggc
ccgcagcgccgcatcgtgctggcgaccaacgtcgcggaaacctcgctgacggtgccgcgc
atccgctacgtcgtcgatcccggtctggcgcggatcaagcgttacagcccgcgcagcaag
ctggaccggctgcacatcgagccggtcagccaggccagcgcgaaccagcgcaagggccgc
tgcgggcgggtgtcggagggcacctgctaccggctgtacagcgaggctgatttcgactcg
cggccggcgtataccgatccggaaatccgccgcgccgcgctggccggcgtgatcctgcgg
atgctgtcgctgggtctgggcgatatcgaaagtttcccgttcctggaaccgcccgacccg
cgcgcgattgctgatggctgggcgcaactggccgagctgggcgcggtcgaagctgccgag
cagggtcagcgcaaactcacggcgaccggccgcctgatggcgcggatgccggtggacgtc
aagctggcgcggatgctggtggcggccaacgcgcgcggctgcgtgcgcgagatgctcgcg
atcgcctcgttcctgggcatccaggacccgcgcgagcgtcccgccgatcagcgcgccgcg
gccgacaacgcgcatgcgcagttcgtcgactaccgctccgagttcgtcggcatcctgaag
ttgtgggacgcctaccagaccgcgcacgaggagatgacccagtcgcagctgcggcgctgg
tgcgagaagcacttcctcggcttcctgcgcatgcgcgaatggcgcgagctgcatcgccag
ctcaagctgatggcggccgacctgggctgggccatgacggctgcggaatcatctaccgga
gaatcatcgcccgcgacagcaacctccccgcgcaaacgcgggtctgtgactgctcgtccc
ccacgcgggcgcagggcggagtctgcggctgttgcgggcgtgggcgaagacgcgggtctg
cgccttgacgcgaccgcctacgccaacctccaccgcgcgctgctcaccggtttgccgacc
cagatcggccaccgcgtgcagccggccgacagcaagccgcctgccgacaggaaggcgggc
gagcgcaaggccggagacaggaagaccggcggcggctacgaaggcccacgcggacgccgc
ttccagctgtttcccggctcctggctgatccgcaagccgccgccgtgggtgctgtcggcg
accctgctcgacaccgaaaaggtgtgggcgatgaccaatgccgcgatcgagccgcaatgg
gcgatcgacgagctcggccaactgctggcgcggcgccactacgacccgcgctggtcgcgt
tcgcagggccgcgtggtcggcagcgagcagatcagcctgttcgggctggtgctggcaccg
aagcggccggtgcattacggcggcctgtatccggaagaaagccgggcgatcttcgcccgc
gatgcgctggtgaccggggagatcaacacccgcagcgggttcctgcagcgcaacctggcg
atgctcgacaaggcgcgcgaggaggaagccaagcagcgccgcgccggcctggtcgtcgac
gaggactggatggccgcctggtatctggagcggctgccaccggatgtccacaacgcgcag
gcgctggacgcctggtacggcaagttgccggcgccgcggaaggccgcgctggagtggtcg
ctggacgatctgctggtcggcgacgagaccgacgccgcccgcttcccgcccgagatcgcg
ttgggcgatgcgcgactggcggtcagctaccgcttcgagcccggcgcacccgatgacggc
atgaccgtatcggtgccgctgcacctgctcaacgcgctggacccggtgcggctggattgg
ctggcgccgggcttcgcgcaggacaaggcgatggccctgatccgcagcctgccgaaggcg
cagcgccgcaatttcgttcccgcaccggactttgcgcgtgcgttccacgaggcgcatccc
ggccccgaggaagcgccgttcgccgaggtactggcgcgcttcctgcagcaggtcaccggt
gccgcggtggcggcggacgagttcgacgaatccgcactggagccgcacctgcgcgccaac
ctgcgtctgctggatgccccgggccgtgacggcaagcgcaacgtgctggccgaatcgcgc
gacctggccgagttgcggacccgcttcggtgagcgcgcggcacgggcattcgcggcccac
gccgccgatggcctgggccagcgcggactgctggccttccccgaggaacccattccggcc
agcctgcccggcgcagccggcatgccggcgtatccggccttgcatgacgatggcgacagc
gtgtcgttgcaggtgcatgccgaacaagagacggcccggcgccaccatccgcgcggtgtg
cggcggctgctgtggctggcgctgtctgatgcgcgcaagcaggcgcgcaggcaactgccg
atctcgccgaagaccggcctgctgtacgcggcgatcgagtcggccgcgccacgcgcgcag
ggcagccgcgatggcgatcgcttgcgcgccgatctggtcgacggcgcgttcgccgcgctg
gtggccgacgggctggacgggatccgcgatgccgccgcgttcgacgcgcgccgtgaggac
gtggccaaacggttgttcgccgaatccatggagcgcctgcagcaggccgaggtcatcctc
gccgccgtgtcgcaggcgcgcgcgagtctggaatcgcccttgatgggctgggccagcgcc
aacctggacgacatgcgtgcgcaactggcggcgctgaccccgccgggcttcctgcgcgac
gtgccggccacggccttgcgcgactatccgcgctacctgaaggcgctggccctgcgtggc
gagcgcgccctgcgcgatcccgtccgtgaccaggcccggatgctggagttgacacccttc
atcgccgcgctcgcccaggccgaggccagcggcgccagcgccgagcccgggtggcaggcg
ctgcgctgggagctggaggagttgcgggtgtcgctgtttgcccaggaactgggctcgcgc
ggcgtgtcgccgaagaaactcgccgcgcgtttgtcgcagttgcgccggtag
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