Lysobacter sp. CW239: H2514_02755
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Entry
H2514_02755 CDS
T10688
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
lyw Lysobacter sp. CW239
Pathway
lyw03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lyw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
H2514_02755 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lyw03021
]
H2514_02755 (rpoB)
03400 DNA repair and recombination proteins [BR:
lyw03400
]
H2514_02755 (rpoB)
Enzymes [BR:
lyw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
H2514_02755 (rpoB)
Transcription machinery [BR:
lyw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
H2514_02755 (rpoB)
DNA repair and recombination proteins [BR:
lyw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
H2514_02755 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
QOD91588
LinkDB
All DBs
Position
643403..647566
Genome browser
AA seq
1387 aa
AA seq
DB search
MSPKGTYSFTEKKRIRKDFGKSRSILEVPFLLAIQVDSYRRFLQEDIAPAKRADRGLHAA
LKSVFPIASYSGNAALEYVGYKLGEPAFDERECRQRGMSYGAPLRVTVRLVIYDRESSTK
AIKYVKEQEVYMGEIPLMTGNGTFIVNGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLY
SARIIPYRGSWLDFEFDPKDGLFTRIDRRRKLPVTILLRALGYNNEEMLAEFFEVNTFHI
DPKEGVQLELVAERLRGETLDFDLADGDKVIVEAGRRITARHVKQLEASGIEALAVPDEY
LVGRTLSHDVIDASTGELIAAANDEITEEQLALFRKAGIETVGTIWTNDLDRGAFISNTL
RIDPSKTQLEALVEIYRMMRPGEPPTKDAAQNLFHNLFFTFDRYDLSAVGRMKFNRRIGR
KEVTGASVLYDARYFSQRKDDESKRLAAEMGEGSDILDVLKVLTEIRNGRGIVDDIDHLG
NRRVRSVGEMAENTFRVGLVRVERAVKERLSMAEADGLTPQDLINAKPVAAAVKEFFGSS
QLSQFMDQNNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCTIETPEGPNI
GLINSLAVFARTNEYGFLETPYRKVVDGKVTDEVEYLSAIEENEYVIAQANAPQDDKGVL
SELFVDCRYQGESMLKPPSEVHFMDVSPMQTVSVAAALVPFLEHDDANRALMGANMQRQA
VPTLRSQKPLVGTGIERAVARDSGVTVNALRGGTIEQIDAARIVVKVNEDEISSETDAGV
DIYNLIKYTRSNQNTCINQTPLVNVGDVIARGDVLADGPSTDIGELALGQNMLIAFMPWN
GYNFEDSILLSERVVQEDRYTTIHIEELTAVARDTKLGPEEISADIPNVSEQALNRLDES
GVVYIGAEVRAGDILVGKVTPKGESQLTPEEKLLRAIFGEKASDVKDSSLRVPPGMDGNV
IDVQVFTRDGIEKDKRAKQIEESEIRRVKKDFDDQFRILEAAIYNRLRSQLIGKVANGGA
GLKKGETVTSLVLDGLSRKDWFSLRMKDESAVEAIERAQKQIDVHEKEFERRFADKRAKI
TQGDDLAPGVLKMVKVFLAVKRRIQPGDKMAGRHGNKGVVSILVPEQDMPYMANGETVDI
VLNPLGVPSRMNIGQVLEVHLGWAAKGLGEKIQRMLDAQAKVTELRKFLDEIYNHDSKLV
GQRVDLKQFSDQELLALAGNLTDGVPMATPVFDGAEESEIKMMLQLADLPTSGQTTLYDG
RTGEAFDREVTVGYMHMLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEV
WALEAYGAAYTLQEMLTVKSDDVQGRNQMYKNIVDGEYETVAGMPESFNVLVKEIRSLAI
NMELEEN
NT seq
4164 nt
NT seq
+upstream
nt +downstream
nt
atgagcccgaagggcacctattcgttcactgaaaagaagcgcatccgcaaggacttcggc
aagagccgttcgatcctcgaggtgccgttcctgcttgcgatccaggtcgattcctatcgc
cggttcctgcaggaagacatcgcaccggccaagcgcgcggatcgcggcctgcacgcggcg
ctcaagtcggtgttcccgattgccagctacagcggcaacgcggcgctggaatatgtcggc
tacaagctgggcgagcccgccttcgacgagcgcgagtgccgccaacgtggcatgagctac
ggcgcgccgctgcgcgtgaccgtgcgcctggtgatctacgaccgcgagtcgtcgaccaag
gccatcaagtacgtgaaggagcaggaggtctacatgggcgagattccgctcatgaccggc
aacggcaccttcatcgtcaacggcaccgagcgcgtcatcgtgtcccagctgcaccgttcg
ccaggcgtgttcttcgaccacgaccgcggcaagacccacagctcgggcaagctgctgtac
agcgcccgcatcattccgtaccgcggctcgtggctggacttcgagttcgacccgaaggac
ggcctgttcacccgcatcgaccgtcgccgcaagttgccggtgacgatcctgctgcgtgca
ctgggctacaacaacgaagagatgctggccgagttcttcgaggtcaacaccttccacatc
gaccccaaggaaggcgtgcagctggagctggtggccgagcgcctgcgtggcgagaccctg
gacttcgacctcgccgatggcgacaaggtcatcgtcgaggccggccgccgcatcaccgcg
cgtcacgtcaagcagctggaggcctcgggcatcgaagcgctggccgtgccggatgagtac
ctggtcggccgcaccctgtcccacgacgtgatcgacgccagcaccggcgagctgatcgcc
gcggccaacgacgagatcaccgaggagcagctggcgctgttccgcaaggccggcatcgag
accgtcggcacgatctggaccaacgacctggatcgcggcgcgttcatttccaacaccctg
cgcatcgacccgagcaagacccagctcgaggcgctggtcgagatctaccggatgatgcgt
ccgggcgagccgccgaccaaggacgccgcacagaacctgttccacaacctgttcttcacc
ttcgaccgctacgacctgtcggccgtcggccggatgaagttcaaccgccgcatcggccgc
aaggaagtcaccggcgcgtcggtgctgtacgacgcccgctacttctcccagcgcaaggac
gacgagtccaagcgtctcgccgccgagatgggcgagggctccgacatcctcgacgtgctc
aaggtgctgaccgagatccgcaacggccgcggcatcgtcgatgacatcgatcacctcggc
aaccgccgcgtgcgctcggtcggcgagatggccgagaacaccttccgcgtcggcctggtc
cgggtggagcgtgcggtcaaggagcgcctgtcgatggccgaggccgatggcctgaccccg
caggacctgatcaacgccaagccggttgccgccgccgtgaaggagttcttcggctcctcg
cagctgtcgcagttcatggaccagaacaacccgctgtccgaggtcacccacaagcgccgc
gtctccgcgcttgggccgggcggcctgacccgcgagcgcgccggcttcgaggtgcgcgac
gtgcacccgacccattacggccgcgtctgcaccattgaaaccccggaaggcccgaacatc
ggcctgatcaactcgctggccgtgttcgcccgcaccaacgagtacggcttcctggagacg
ccgtaccgcaaggtcgtggacggcaaggtcaccgacgaggtcgagtacctgtcggcgatc
gaggagaacgagtacgtcatcgcccaggccaacgcgccgcaggacgacaagggcgtgctg
agcgagctgttcgtggactgccgttaccagggcgagtcgatgctgaagccgcccagcgag
gtccacttcatggacgtctcgccgatgcagacggtgtcggtcgccgccgcgctggtgccg
ttcctggagcacgacgacgcgaaccgcgcactgatgggcgcgaacatgcagcgccaggcc
gtgccgacgctgcgttcgcagaagccgctggtgggtaccggtatcgagcgcgcggtggcg
cgtgactcgggtgtgaccgtgaatgcgttgcgtggcggcacgatcgagcagatcgatgcg
gcgcgcatcgtggtcaaagtcaacgaggacgagatcagcagcgagaccgatgccggtgtc
gatatctacaacctgatcaagtacacccgttccaaccagaacacctgcatcaaccagacc
ccgctggtcaacgtgggcgacgtgatcgcccgcggcgacgtgctggccgacggtccttcg
accgatatcggcgaactcgcgctgggccagaacatgctcatcgcgttcatgccgtggaac
ggctacaacttcgaggactccatcctgctgtccgagcgggtggtgcaggaggatcgctac
accacgatccacatcgaggagctgaccgcggtcgcacgtgacaccaagctggggccggag
gagatctccgcggacatcccgaacgtctccgagcaggctctgaaccgcctcgacgagtcc
ggcgtggtgtacatcggtgccgaggtgcgtgccggcgacatcctggtcggcaaggtcacg
ccgaagggcgagagccagctgaccccggaagagaagctgctgcgtgcgatcttcggcgag
aaggcgagcgacgtgaaagacagctcgctgcgcgtgccgccgggcatggacggcaacgtc
atcgacgtgcaggtcttcacccgcgacgggatcgagaaggacaagcgcgccaagcagatc
gaggaatccgagatccgccgggtcaagaaggacttcgacgaccagttccgcatcctcgag
gcggcgatctacaaccgcctgcgcagccagctgatcggcaaggtcgccaacggcggcgcc
ggcctcaagaagggcgagaccgtgaccagcctggtgctggacggcctgtctcggaaggac
tggttcagcctgcggatgaaggacgagtcggcggtcgaggcgatcgagcgtgcgcagaag
cagatcgacgttcacgagaaggagttcgagcgccggttcgccgacaagcgcgccaagatc
acccagggcgacgacctcgccccgggcgtactgaagatggtcaaggtgttcctggcggtg
aagcgccgcatccagccgggcgacaagatggccggccgccatggcaacaagggtgtggta
tcgatcctggtgccggagcaggacatgccgtacatggccaacggcgagaccgtcgacatc
gtgctgaacccgctgggcgtgccgagccgcatgaacatcggccaggtgctggaggtccat
ctgggctgggcggcgaaggggctgggcgagaagatccagcgcatgctcgacgcacaggcc
aaggtcaccgagctgcgcaagttcctcgacgagatctacaaccacgacagcaagctggtc
gggcagcgggtcgacctcaagcagttcagcgaccaggaactgctggcgctggccggcaac
ctgaccgacggcgtgccgatggcgacgccggtgttcgacggtgcagaagagtcggagatc
aagatgatgctccagctcgccgacctgccgaccagtggccagaccacgctgtacgacggc
cgcaccggcgaggcgttcgaccgcgaagtcaccgtcggctacatgcacatgctgaagttg
aaccacctggtcgacgacaagatgcatgcgcgctcgaccggtccgtactcgctcgtcacc
cagcagccgctgggcggcaaggcgcagttcggcggccagcgcttcggcgagatggaagtc
tgggcactggaagcctacggcgcggcctacaccctgcaggaaatgctgacggtgaagtcc
gacgacgtgcagggccgcaaccagatgtacaagaacatcgtcgatggcgagtacgagacg
gtcgccggcatgccggagtccttcaacgtgctggtgaaggaaatccgctcgctcgcgatc
aacatggagctggaagagaactga
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integrated database retrieval system
